RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 SYNE4Q8N205 404 aa28.93■■■□□ 2.22
VTI1B-201ENST00000216456 SMC1BQ8NDV3 1235 aa28.93■■■□□ 2.22
VTI1B-201ENST00000216456 CHPF2Q9P2E5 772 aa28.93■■■□□ 2.22
VTI1B-201ENST00000216456 WDR90Q96KV7 1748 aa28.93■■■□□ 2.22
VTI1B-201ENST00000216456 IBTKQ9P2D0 1353 aaPredicted RBP28.92■■■□□ 2.22
VTI1B-201ENST00000216456 APAF1O14727 1248 aa28.92■■■□□ 2.22
VTI1B-201ENST00000216456 POTEIP0CG38 1075 aa28.92■■■□□ 2.22
VTI1B-201ENST00000216456 POTEJP0CG39 1038 aa28.92■■■□□ 2.22
VTI1B-201ENST00000216456 ALDH1B1P30837 517 aa28.92■■■□□ 2.22
VTI1B-201ENST00000216456 SNED1Q8TER0 1413 aa28.92■■■□□ 2.22
VTI1B-201ENST00000216456 ZNF541Q9H0D2 1346 aa28.92■■■□□ 2.22
VTI1B-201ENST00000216456 RPGRQ92834 1020 aaKnown RBP28.91■■■□□ 2.22
VTI1B-201ENST00000216456 DDX21Q9NR30 783 aaKnown RBP eCLIP28.9■■■□□ 2.22
VTI1B-201ENST00000216456 MBIPQ9NS73 344 aa28.9■■■□□ 2.22
VTI1B-201ENST00000216456 RIC1Q4ADV7 1423 aa28.88■■■□□ 2.21
VTI1B-201ENST00000216456 HOXA10P31260 410 aaPredicted RBP28.88■■■□□ 2.21
VTI1B-201ENST00000216456 PARP10Q53GL7 1025 aa28.88■■■□□ 2.21
VTI1B-201ENST00000216456 HDGFL1Q5TGJ6 251 aa28.88■■■□□ 2.21
VTI1B-201ENST00000216456 PPP1R42Q7Z4L9 355 aa28.88■■■□□ 2.21
VTI1B-201ENST00000216456 RTKN2Q8IZC4 609 aa28.88■■■□□ 2.21
VTI1B-201ENST00000216456 UTP14AQ9BVJ6 771 aaKnown RBP28.88■■■□□ 2.21
VTI1B-201ENST00000216456 NLRP10Q86W26 655 aa28.87■■■□□ 2.21
VTI1B-201ENST00000216456 CFAP44Q96MT7 982 aa28.87■■■□□ 2.21
VTI1B-201ENST00000216456 COL4A5P29400 1685 aa28.86■■■□□ 2.21
VTI1B-201ENST00000216456 HCLS1P14317 486 aaPredicted RBP28.86■■■□□ 2.21
VTI1B-201ENST00000216456 IARSP41252 1262 aaKnown RBP28.86■■■□□ 2.21
VTI1B-201ENST00000216456 DUSP27Q5VZP5 1158 aa28.86■■■□□ 2.21
VTI1B-201ENST00000216456 ZNF853P0CG23 659 aa28.84■■■□□ 2.21
VTI1B-201ENST00000216456 TCIRG1Q13488 830 aa28.84■■■□□ 2.21
VTI1B-201ENST00000216456 RBM17Q96I25 401 aaKnown RBP28.84■■■□□ 2.21
VTI1B-201ENST00000216456 ELL2O00472 640 aaPredicted RBP28.83■■■□□ 2.21
VTI1B-201ENST00000216456 PPEF1O14829 653 aaPredicted RBP28.83■■■□□ 2.21
VTI1B-201ENST00000216456 SLC10A5Q5PT55 438 aa28.83■■■□□ 2.21
VTI1B-201ENST00000216456 NLRP3Q96P20 1036 aa28.83■■■□□ 2.21
VTI1B-201ENST00000216456 CRAMP1Q96RY5 1269 aa28.83■■■□□ 2.21
VTI1B-201ENST00000216456 ANKRD36CQ5JPF3 1778 aa28.82■■■□□ 2.2
VTI1B-201ENST00000216456 ABCC4O15439 1325 aa28.81■■■□□ 2.2
VTI1B-201ENST00000216456 KLRG1Q96E93 195 aa28.81■■■□□ 2.2
VTI1B-201ENST00000216456 PSMD1Q99460 953 aa28.81■■■□□ 2.2
VTI1B-201ENST00000216456 TRMT112Q9UI30 125 aaKnown RBP28.81■■■□□ 2.2
VTI1B-201ENST00000216456 ATP5J2-PTCD1G3V325 749 aa28.8■■■□□ 2.2
VTI1B-201ENST00000216456 FZD9O00144 591 aa28.79■■■□□ 2.2
VTI1B-201ENST00000216456 HSP90AB3PQ58FF7 597 aa28.79■■■□□ 2.2
VTI1B-201ENST00000216456 L3MBTL3Q96JM7 780 aaPredicted RBP28.79■■■□□ 2.2
VTI1B-201ENST00000216456 HOXB7P09629 217 aa28.78■■■□□ 2.2
VTI1B-201ENST00000216456 TAF1DQ9H5J8 278 aaPredicted RBP28.78■■■□□ 2.2
VTI1B-201ENST00000216456 DBF4Q9UBU7 674 aaPredicted RBP28.78■■■□□ 2.2
VTI1B-201ENST00000216456 RNF123Q5XPI4 1314 aa28.77■■■□□ 2.2
VTI1B-201ENST00000216456 ANKRD13DQ6ZTN6 518 aa28.77■■■□□ 2.2
VTI1B-201ENST00000216456 C8orf58Q8NAV2 365 aa28.77■■■□□ 2.2
VTI1B-201ENST00000216456 PLBD2Q8NHP8 589 aa28.77■■■□□ 2.2
VTI1B-201ENST00000216456 IFT57Q9NWB7 429 aa28.77■■■□□ 2.2
VTI1B-201ENST00000216456 LAMB2P55268 1798 aa28.77■■■□□ 2.2
VTI1B-201ENST00000216456 RTL5Q5HYW3 569 aaPredicted RBP28.76■■■□□ 2.19
VTI1B-201ENST00000216456 CHADLQ6NUI6 762 aa28.76■■■□□ 2.19
VTI1B-201ENST00000216456 PHAXQ9H814 394 aaKnown RBP28.76■■■□□ 2.19
VTI1B-201ENST00000216456 SH3TC1Q8TE82 1336 aa28.75■■■□□ 2.19
VTI1B-201ENST00000216456 CC2D2BQ6DHV5 1058 aa28.75■■■□□ 2.19
VTI1B-201ENST00000216456 ISCA1Q9BUE6 129 aa28.75■■■□□ 2.19
VTI1B-201ENST00000216456 PCNTO95613 3336 aa28.74■■■□□ 2.19
VTI1B-201ENST00000216456 EAPPQ56P03 285 aaPredicted RBP28.74■■■□□ 2.19
VTI1B-201ENST00000216456 FAM89AQ96GI7 184 aa28.74■■■□□ 2.19
VTI1B-201ENST00000216456 ATP6V0A2Q9Y487 856 aa28.74■■■□□ 2.19
VTI1B-201ENST00000216456 TAF1P21675 1872 aa28.73■■■□□ 2.19
VTI1B-201ENST00000216456 GNAI1P63096 354 aa28.73■■■□□ 2.19
VTI1B-201ENST00000216456 LARGE2Q8N3Y3 721 aa28.73■■■□□ 2.19
VTI1B-201ENST00000216456 JDP2Q8WYK2 163 aa28.73■■■□□ 2.19
VTI1B-201ENST00000216456 GJA3Q9Y6H8 435 aa28.73■■■□□ 2.19
VTI1B-201ENST00000216456 IQCA1LA6NCM1 817 aa28.72■■■□□ 2.19
VTI1B-201ENST00000216456 AOC3Q16853 763 aa28.72■■■□□ 2.19
VTI1B-201ENST00000216456 TSPYL6Q8N831 410 aa28.72■■■□□ 2.19
VTI1B-201ENST00000216456 HYPKQ9NX55 129 aa28.72■■■□□ 2.19
VTI1B-201ENST00000216456 COL4A1P02462 1669 aa28.72■■■□□ 2.19
VTI1B-201ENST00000216456 TSR2Q969E8 191 aaKnown RBP28.71■■■□□ 2.19
VTI1B-201ENST00000216456 HACL1Q9UJ83 578 aa28.71■■■□□ 2.19
VTI1B-201ENST00000216456 EPHX2P34913 555 aa28.7■■■□□ 2.18
VTI1B-201ENST00000216456 JMYQ8N9B5 988 aa28.7■■■□□ 2.18
VTI1B-201ENST00000216456 SCN4AP35499 1836 aa28.69■■■□□ 2.18
VTI1B-201ENST00000216456 PPIP5K2O43314 1243 aa28.69■■■□□ 2.18
VTI1B-201ENST00000216456 GPC2Q8N158 579 aa28.69■■■□□ 2.18
VTI1B-201ENST00000216456 DDX60Q8IY21 1712 aaKnown RBP28.69■■■□□ 2.18
VTI1B-201ENST00000216456 DDX46Q7L014 1031 aaKnown RBP28.68■■■□□ 2.18
VTI1B-201ENST00000216456 LDHDQ86WU2 507 aa28.68■■■□□ 2.18
VTI1B-201ENST00000216456 LTBP1Q14766 1721 aa28.68■■■□□ 2.18
VTI1B-201ENST00000216456 EIF6P56537 245 aaKnown RBP28.67■■■□□ 2.18
VTI1B-201ENST00000216456 GRAPQ13588 217 aa28.67■■■□□ 2.18
VTI1B-201ENST00000216456 RIC3Q7Z5B4 369 aa28.67■■■□□ 2.18
VTI1B-201ENST00000216456 GRAPLQ8TC17 118 aaPredicted RBP28.67■■■□□ 2.18
VTI1B-201ENST00000216456 JARID2Q92833 1246 aaPredicted RBP28.67■■■□□ 2.18
VTI1B-201ENST00000216456 CLEC11AQ9Y240 323 aa28.67■■■□□ 2.18
VTI1B-201ENST00000216456 BBOX1O75936 387 aa28.66■■■□□ 2.18
VTI1B-201ENST00000216456 CALD1Q05682 793 aaKnown RBP28.66■■■□□ 2.18
VTI1B-201ENST00000216456 SP8Q8IXZ3 490 aa28.66■■■□□ 2.18
VTI1B-201ENST00000216456 CELF1Q92879 486 aaKnown RBP28.66■■■□□ 2.18
VTI1B-201ENST00000216456 SCNN1DP51172 638 aa28.65■■■□□ 2.18
VTI1B-201ENST00000216456 MAP1SQ66K74 1059 aaPredicted RBP28.65■■■□□ 2.18
VTI1B-201ENST00000216456 DPP8Q6V1X1 898 aaPredicted RBP28.65■■■□□ 2.18
VTI1B-201ENST00000216456 NIM1KQ8IY84 436 aa28.65■■■□□ 2.18
VTI1B-201ENST00000216456 MYD88Q99836 296 aa28.65■■■□□ 2.18
VTI1B-201ENST00000216456 PASKQ96RG2 1323 aa28.65■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms