RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Tti2Q8BGV4 512 aa18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Hecw1Q8K4P8 1604 aa18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Syt1P46096 421 aa18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Lrrcc1Q69ZB0 1026 aa18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Ccdc43Q9CR29 222 aaKnown RBP18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Ces1hD3Z298 562 aa18.1■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Slc7a3P70423 618 aa18.1■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Dnaaf4Q8R368 420 aa18.1■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Def6Q8C2K1 630 aa18.1■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Ak2Q9WTP6 239 aa18.1■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Arid4aF8VPQ2 1261 aaKnown RBP18.1■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Hvcn1Q3U2S8 269 aa18.1■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Nup133Q8R0G9 1155 aa18.1■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Mybbp1aQ7TPV4 1344 aaKnown RBP18.09■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Wasf1Q8R5H6 559 aa18.09■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Edc3Q8K2D3 508 aaKnown RBP18.09■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Chd1lQ9CXF7 900 aa18.09■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Txnrd1Q9JMH6 613 aa18.09■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Chaf1aQ9QWF0 911 aa18.09■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Tmem266Q8BZB3 538 aa18.09■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Ercc3P49135 783 aa18.09■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Fam193aQ8CGI1 1231 aaKnown RBP18.08■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Arhgap23Q69ZH9 1483 aa18.08■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 CalrP14211 416 aaKnown RBP18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cbx1P83917 185 aaKnown RBP18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Larp1Q6ZQ58 1072 aaKnown RBP18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Fam213aQ9CYH2 218 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Zkscan7E9PVW1 718 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 SelenooQ9DBC0 667 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Plekho1Q9JIY0 408 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Kif24Q6NWW5 1356 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Wdr17E9Q271 1322 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 NefhP19246 1090 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ddx17Q501J6 650 aaKnown RBP18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 LratQ9JI60 231 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Mmel1Q9JLI3 765 aa18.08■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ccdc102aQ3TMW1 549 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Slu7Q8BHJ9 585 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Rad50P70388 1312 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Eif4a1P60843 406 aaKnown RBP18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cers3Q1A3B0 383 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cep131Q62036 1060 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ppp4r3aQ6P2K6 820 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Snx13Q6PHS6 957 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Nat10Q8K224 1024 aaKnown RBP18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Rims1Q99NE5 1463 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 FancaQ9JL70 1439 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Nphp3Q7TNH6 1325 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Gm45015A0A140LII9 184 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Gm18336A0A140LIU8 765 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cyp26c1B2RXA7 518 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Speer4dL7N216 212 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Iqca1Q9CUL5 857 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ccdc39Q9D5Y1 937 aa18.07■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Kdm3aQ6PCM1 1323 aa18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cavin1O54724 392 aa18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 EspnlQ3UYR4 1005 aa18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Utp18Q5SSI6 552 aaKnown RBP18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Slc35g1Q8BY79 368 aa18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Mrpl44Q9CY73 333 aaKnown RBP18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Phkg2Q9DB30 406 aa18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Iqgap1Q9JKF1 1657 aaKnown RBP18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cfap73J3QPZ5 306 aa18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Bag1Q60739 355 aa18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ift57Q8BXG3 429 aa18.06■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Abca6Q8K441 1624 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 LyarQ08288 388 aaKnown RBP18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Atp2b3Q0VF55 1220 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Vps54Q5SPW0 977 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Spag5Q7TME2 1165 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 NmiO35309 314 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Tom1O88746 492 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 HmmrQ00547 794 aaKnown RBP18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Neurl4Q5NCX5 1563 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cep152A2AUM9 1736 aaKnown RBP18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Setd1aE9PYH6 1716 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 MarsQ68FL6 902 aaKnown RBP18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 NhsB1AV60 1647 aa18.05■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cnksr1A2A9K7 700 aa18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Bin1O08539 588 aaKnown RBP18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Pdzd9Q9D9M4 266 aa18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Disp3A3KFU9 1347 aa18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Eif5P59325 429 aaKnown RBP18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Tsr2Q8C8T8 191 aa18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Clasp1Q80TV8 1535 aaKnown RBP18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Dctn1O08788 1281 aa18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Usp25P57080 1055 aa18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Rai14Q9EP71 979 aaKnown RBP18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 IkQ9Z1M8 557 aaKnown RBP18.04■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Gm21985Q6P6P5 1106 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ak9G3UYQ4 1894 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ets1P27577 440 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Zc3h12cQ5DTV4 884 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Srgap1Q91Z69 1062 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 ParvgQ9ERD8 331 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Smarcc1P97496 1104 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ppp1r21Q3TDD9 780 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cep112Q5PR68 954 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Cadps2Q8BYR5 1297 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Ptcd1Q8C2E4 695 aaKnown RBP18.03■□□□□ 0.48
Retrieved 100 of 22,080 RNA–protein pairs in 68.7 ms