RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MAFBQ9Y5Q3 323 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 LRIT2A6NDA9 550 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 C1QTNF3-AMACRE9PGA6 284 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ABCD4O14678 606 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 FOXD2O60548 495 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CYTIPO60759 359 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 THBS1P07996 1170 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CD3GP09693 182 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SOX18P35713 384 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CD96P40200 585 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SLC26A5P58743 744 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RING1Q06587 406 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PIGFQ07326 219 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RAB31Q13636 194 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SFXN4Q6P4A7 337 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ALKAL2Q6UX46 152 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 JAGN1Q8N5M9 183 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SLAIN1Q8ND83 568 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR5H2Q8NGV7 314 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR6K6Q8NGW6 343 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR2AJ1Q8NGZ0 328 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 THAP4Q8WY91 577 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 KLHL15Q96M94 604 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SEC11CQ9BY50 192 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR6C2Q9NZP2 312 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 DHDHQ9UQ10 334 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 V9GY05 133 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SMIM35A0A1B0GVV1 85 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 LEUTXA8MZ59 168 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 HPGDSO60760 199 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 DIRAS3O95661 229 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SCGB1D1O95968 90 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GSRP00390 522 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 FHP07954 510 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ITGB5P18084 799 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GABRB1P18505 474 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RPP30P78346 268 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM115Q12893 351 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CELF3Q5SZQ8 465 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 FAM151BQ6UXP7 276 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TRAPPC5Q8IUR0 188 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 MCATQ8IVS2 390 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 NKAIN3Q8N8D7 197 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 LMNTD1Q8N9Z9 388 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 WFIKKN1Q96NZ8 548 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR2A14Q96R47 310 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 NARFLQ9H6Q4 476 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GSKIPQ9P0R6 139 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 MEIKINA0A087WXM9 373 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR6C74A6NCV1 312 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 B4DEV8 164 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 H3BRB1 525 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 BDNFP23560 247 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 THBS3P49746 956 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 EPHA5P54756 1037 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 MAP4K2Q12851 820 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GRIK5Q16478 980 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 FAM171A1Q5VUB5 890 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF852Q6ZMS4 543 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 VRK3Q8IV63 474 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF101Q8IZC7 436 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SIDT2Q8NBJ9 832 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 NETO2Q8NC67 525 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR8J2Q8NGG1 315 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 WDR48Q8TAF3 677 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ADAMTS18Q8TE60 1221 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TUT1Q9H6E5 874 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ZDHHC4Q9NPG8 344 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 C1orf123Q9NWV4 160 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CBLCQ9ULV8 474 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 UMAD1C9J7I0 102 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SIX3O95343 332 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 POP4O95707 220 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 METTL15P1P0C7V9 234 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 HMGCLP35914 325 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PRKAG1P54619 331 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SFRP4Q6FHJ7 346 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 LYPD4Q6UWN0 246 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RNF165Q6ZSG1 346 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 P4HA3Q7Z4N8 544 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 NEK7Q8TDX7 302 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CASTOR1Q8WTX7 329 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 C14orf79Q96F83 325 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PTGES2Q9H7Z7 377 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 FN3KRPQ9HA64 309 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TUBG2Q9NRH3 451 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RXFP3Q9NSD7 469 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TAS2R5Q9NYW4 299 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ADAM29Q9UKF5 820 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 MEN1O00255 615 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RPP14O95059 124 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ABHD16AO95870 558 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CHRM5P08912 532 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CPT2P23786 658 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CRYBB1P53674 252 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 C1QTNF8P60827 252 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TAF9Q16594 264 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SIRPB2Q5JXA9 342 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 NXNL2Q5VZ03 156 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms