RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 HOXC5Q00444 222 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 FUT7Q11130 342 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 SYT16Q17RD7 645 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 MFSD4BQ5TF39 518 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 PLAG1Q6DJT9 500 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 SLC35F3Q8IY50 421 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 MVB12AQ96EY5 273 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 VSTM2LQ96N03 204 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 CUTCQ9NTM9 273 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 C14orf105Q9NVL8 296 aa20.48■□□□□ 0.87
PNKP-220ENST00000627232 TESQ9UGI8 421 aaKnown RBP20.48■□□□□ 0.87
PNKP-220ENST00000627232 RPL36Q9Y3U8 105 aaKnown RBP20.48■□□□□ 0.87
PNKP-220ENST00000627232 MN1Q10571 1320 aaPredicted RBP20.47■□□□□ 0.87
PNKP-220ENST00000627232 KLF4O43474 513 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 CNOT3O75175 753 aaKnown RBP20.47■□□□□ 0.87
PNKP-220ENST00000627232 GIMD1P0DJR0 217 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 ARL4DP49703 201 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 EFNB1P98172 346 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 BNIP3Q12983 259 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 ERV3-1Q14264 604 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 SPCS2Q15005 226 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 ZSWIM7Q19AV6 140 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 KMT5CQ86Y97 462 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 TCEANCQ8N8B7 351 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 TVP23BQ9NYZ1 205 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 NLGN3Q9NZ94 848 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 KLHL3Q9UH77 587 aa20.47■□□□□ 0.87
PNKP-220ENST00000627232 OR2B3O76000 313 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 ADORA3P0DMS8 318 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 SSTR4P31391 388 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 ZNF267Q14586 743 aaPredicted RBP20.46■□□□□ 0.87
PNKP-220ENST00000627232 TIGD6Q17RP2 521 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 FLYWCH1Q4VC44 716 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 ACSM5Q6NUN0 579 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 SLC27A4Q6P1M0 643 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 ZNF367Q7RTV3 350 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 PRSS42Q7Z5A4 293 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 GRAMD2AQ8IUY3 354 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 RNF113BQ8IZP6 322 aaKnown RBP20.46■□□□□ 0.87
PNKP-220ENST00000627232 D2HGDHQ8N465 521 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 IQCF1Q8N6M8 205 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 GAB3Q8WWW8 586 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 SLC35B4Q969S0 331 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 FAM46AQ96IP4 442 aaKnown RBP20.46■□□□□ 0.87
PNKP-220ENST00000627232 ZNF559Q9BR84 538 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 PRRG3Q9BZD7 231 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 SLC7A7Q9UM01 511 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 MMACHCQ9Y4U1 282 aa20.46■□□□□ 0.87
PNKP-220ENST00000627232 TMEM184BQ9Y519 407 aaPredicted RBP20.46■□□□□ 0.87
PNKP-220ENST00000627232 NPIPA5A0A0B4J1W7 369 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 NPIPA7E9PJI5 369 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 M0R082 166 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 CDC123O75794 336 aaPredicted RBP20.45■□□□□ 0.86
PNKP-220ENST00000627232 NPIPA8P0DM63 369 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 CD36P16671 472 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 DRD5P21918 477 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 ARRB1P49407 418 aaPredicted RBP20.45■□□□□ 0.86
PNKP-220ENST00000627232 PSMD4P55036 377 aaKnown RBP20.45■□□□□ 0.86
PNKP-220ENST00000627232 CFHR1Q03591 330 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 DCTN2Q13561 401 aaKnown RBP20.45■□□□□ 0.86
PNKP-220ENST00000627232 NCF4Q15080 339 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 OR1Q1Q15612 314 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 CLDN22Q8N7P3 220 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 C7orf57Q8NEG2 295 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 TBC1D15Q8TC07 691 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 OSTF1Q92882 214 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 FGF11Q92914 225 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 OR1F2PQ96R84 312 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 ELF4Q99607 663 aaPredicted RBP20.45■□□□□ 0.86
PNKP-220ENST00000627232 PRSS27Q9BQR3 290 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 DNAJC27Q9NZQ0 273 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 GMEB2Q9UKD1 530 aa20.45■□□□□ 0.86
PNKP-220ENST00000627232 TNRC6BQ9UPQ9 1833 aaKnown RBP20.44■□□□□ 0.86
PNKP-220ENST00000627232 TMEM150CB9EJG8 249 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 PRKYO43930 277 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 MSL3P1P0C860 447 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 MAOAP21397 527 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 HTR2AP28223 471 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 GCGRP47871 477 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 SRSF5Q13243 272 aaKnown RBP20.44■□□□□ 0.86
PNKP-220ENST00000627232 KCNAB1Q14722 419 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 SHBQ15464 509 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 RNLSQ5VYX0 342 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 LYSMD4Q5XG99 296 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 WDR74Q6RFH5 385 aaPredicted RBP20.44■□□□□ 0.86
PNKP-220ENST00000627232 ZAR1Q86SH2 424 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 NRMQ8IXM6 262 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 METTL27Q8N6F8 245 aaPredicted RBP20.44■□□□□ 0.86
PNKP-220ENST00000627232 POGLUT1Q8NBL1 392 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 OR7G1Q8NGA0 311 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 TMEM255BQ8WV15 326 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 SLC41A2Q96JW4 573 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 PLA2G12AQ9BZM1 189 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 EGLN3Q9H6Z9 239 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 Q9N2J8 555 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 LANCL2Q9NS86 450 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.44■□□□□ 0.86
PNKP-220ENST00000627232 CNIH4Q9P003 139 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 NUP210LQ5VU65 1888 aa20.44■□□□□ 0.86
PNKP-220ENST00000627232 LYPD3O95274 346 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms