RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 NSUN3Q9H649 340 aaKnown RBP7.45□□□□□ -1.22
VPS11-209ENST00000622309 NANSQ9NR45 359 aa7.45□□□□□ -1.22
VPS11-209ENST00000622309 GKN1Q9NS71 199 aa7.45□□□□□ -1.22
VPS11-209ENST00000622309 MARCH4Q9P2E8 410 aaPredicted RBP7.45□□□□□ -1.22
VPS11-209ENST00000622309 PCDHB8Q9UN66 801 aa7.45□□□□□ -1.22
VPS11-209ENST00000622309 BACE2Q9Y5Z0 518 aa7.45□□□□□ -1.22
VPS11-209ENST00000622309 OR2W5A6NFC9 320 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ZAR1LA6NP61 321 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 HMSDA8MTL9 139 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 PPM1DO15297 605 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 SLC25A17O43808 307 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 GALR3O60755 368 aaPredicted RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 CD2P06729 351 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 C6P13671 934 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 NQO2P16083 231 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 TYRP1P17643 537 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ABCD3P28288 659 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ADORA2BP29275 332 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 EFNA5P52803 228 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 DCDP81605 110 aaKnown RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 SKP2Q13309 424 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 GFOD2Q3B7J2 385 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 SV2CQ496J9 727 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 OR2G6Q5TZ20 316 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 SFRP4Q6FHJ7 346 aaPredicted RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 PAQR3Q6TCH7 311 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ZNF621Q6ZSS3 439 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 TGIF2LXQ8IUE1 241 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 MISPQ8IVT2 679 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ARRDC1Q8N5I2 433 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ZNF383Q8NA42 475 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 AQP11Q8NBQ7 271 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 GNPDA2Q8TDQ7 276 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 C5orf34Q96MH7 638 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 DPH2Q9BQC3 489 aaPredicted RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 OR10A4Q9H209 315 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ISYNA1Q9NPH2 558 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 EXOSC3Q9NQT5 275 aaKnown RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 TDP1Q9NUW8 608 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 VSX1Q9NZR4 365 aaPredicted RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 PIPOXQ9P0Z9 390 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 PISDQ9UG56 409 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ASB1Q9Y576 335 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 PCDHGC4Q9Y5F7 938 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 PCDHGA5Q9Y5G8 931 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 TRDV1A0A1B0GX56 115 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 KCNK5O95279 499 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 HLA-DPB1P04440 258 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 SRPRAP08240 638 aaKnown RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 QDPRP09417 244 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ANXA7P20073 488 aaKnown RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 RAB4AP20338 218 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 CHI3L1P36222 383 aaPredicted RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 ARL2P36404 184 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 FEN1P39748 380 aaKnown RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 RFX3P48380 749 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 CDH4P55283 916 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 SCAND1P57086 179 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 STARD6P59095 220 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 PITX1P78337 314 aaPredicted RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 HMGCS1Q01581 520 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 MBTD1Q05BQ5 628 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 BCL2L1Q07817 233 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 SLC14A1Q13336 389 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 KCNAB1Q14722 419 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 KRTCAP3Q53RY4 240 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 MRNIPQ6NTE8 343 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 IL20RBQ6UXL0 311 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 GPSM1Q86YR5 675 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 MRPL38Q96DV4 380 aaKnown RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 SPATA33Q96N06 139 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 UBL7Q96S82 380 aaPredicted RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 PRRX2Q99811 253 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 DOHHQ9BU89 302 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 DERL2Q9GZP9 239 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 MFFQ9GZY8 342 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ABCG8Q9H221 673 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 GPN1Q9HCN4 374 aaPredicted RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 FLRT1Q9NZU1 646 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 FLVCR2Q9UPI3 526 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 TNFSF13BQ9Y275 285 aa7.44□□□□□ -1.22
VPS11-209ENST00000622309 ZNF638Q14966 1978 aaKnown RBP7.44□□□□□ -1.22
VPS11-209ENST00000622309 C9orf170A2RU37 121 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 OR14I1A6ND48 311 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 H3BN98 237 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 CREBL2O60519 120 aaPredicted RBP7.43□□□□□ -1.22
VPS11-209ENST00000622309 EIF4EP06730 217 aaKnown RBP7.43□□□□□ -1.22
VPS11-209ENST00000622309 UBBP0CG47 229 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 UBCP0CG48 685 aaKnown RBP7.43□□□□□ -1.22
VPS11-209ENST00000622309 FOLR2P14207 255 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 NPBWR1P48145 328 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 SNRPGP62308 76 aaKnown RBP7.43□□□□□ -1.22
VPS11-209ENST00000622309 RPS27AP62979 156 aaKnown RBP7.43□□□□□ -1.22
VPS11-209ENST00000622309 UBA52P62987 128 aaKnown RBP7.43□□□□□ -1.22
VPS11-209ENST00000622309 TPBGQ13641 420 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 HEPACAMQ14CZ8 416 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 KCNA10Q16322 511 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 SLC36A2Q495M3 483 aa7.43□□□□□ -1.22
VPS11-209ENST00000622309 LBHQ53QV2 105 aaPredicted RBP7.43□□□□□ -1.22
VPS11-209ENST00000622309 TCEAL8Q8IYN2 117 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms