RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 GFRA1P56159 465 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 LASP1Q14847 261 aaKnown RBP13.71□□□□□ -0.21
TRIM28-205ENST00000595028 SF3B4Q15427 424 aaKnown RBP eCLIP13.71□□□□□ -0.213e-8■■■□□ 18.6
TRIM28-205ENST00000595028 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.71□□□□□ -0.21
TRIM28-205ENST00000595028 GRAMD1BQ3KR37 738 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 LSM12Q3MHD2 195 aaKnown RBP13.71□□□□□ -0.21
TRIM28-205ENST00000595028 SPNS3Q6ZMD2 512 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 OR2M3Q8NG83 312 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 RAB3IL1Q8TBN0 382 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 SFXN5Q8TD22 340 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 OTUB1Q96FW1 271 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-205ENST00000595028 SFXN2Q96NB2 322 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 STACQ99469 402 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 SPOCK3Q9BQ16 436 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 TBL1XR1Q9BZK7 514 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 RTN4RQ9BZR6 473 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 ENKD1Q9H0I2 346 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 KCNJ16Q9NPI9 418 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 NPDC1Q9NQX5 325 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-205ENST00000595028 SDHAF3Q9NRP4 125 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 THAP1Q9NVV9 213 aa13.71□□□□□ -0.21
TRIM28-205ENST00000595028 MRPS18CQ9Y3D5 142 aaKnown RBP13.71□□□□□ -0.21
TRIM28-205ENST00000595028 KCNK2O95069 426 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 NGFRP08138 427 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 IGFBP2P18065 325 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 LBPP18428 481 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 MSX1P28360 303 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 CCT3P49368 545 aaKnown RBP13.7□□□□□ -0.22
TRIM28-205ENST00000595028 CLK3P49761 638 aaKnown RBP13.7□□□□□ -0.22
TRIM28-205ENST00000595028 DSCR4P56555 118 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-205ENST00000595028 WNT3P56703 355 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 TP53BP2Q13625 1128 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 GANABQ14697 944 aaKnown RBP13.7□□□□□ -0.22
TRIM28-205ENST00000595028 SLC25A35Q3KQZ1 300 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 SPDYE7PQ495Y7 208 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 NSUN5P2Q63ZY6 315 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 OGFOD2Q6N063 350 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 ENPP6Q6UWR7 440 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 ZAR1Q86SH2 424 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 GALNT10Q86SR1 603 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 MARCH3Q86UD3 253 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 TRIM42Q8IWZ5 723 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 NAXEQ8NCW5 288 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 FAM110BQ8TC76 370 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 MOAP1Q96BY2 351 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 TREX2Q9BQ50 279 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-205ENST00000595028 YIPF4Q9BSR8 244 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 TRIM8Q9BZR9 551 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 DSN1Q9H410 356 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 DUSP22Q9NRW4 184 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 GPATCH2Q9NW75 528 aa13.7□□□□□ -0.22
TRIM28-205ENST00000595028 IGLV3-32A0A0A0MS00 114 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 CD8B2A6NJW9 211 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 HSPB2A8KAH6 182 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 ALG1L2C9J202 215 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 H0Y3Z8 333 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 SDHDO14521 159 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 ANKRD28O15084 1053 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 CFLARO15519 480 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 ZIC3O60481 467 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 OXSR1O95747 527 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-205ENST00000595028 ANGPTL1O95841 491 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 KRT16P08779 473 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 CPN1P15169 458 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 TCEA1P23193 301 aaKnown RBP13.69□□□□□ -0.22
TRIM28-205ENST00000595028 LCN1P31025 176 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 CEACAM8P31997 349 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-205ENST00000595028 SOAT1P35610 550 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 LHX2P50458 406 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 B3GALT5-AS1P59052 145 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 HBA1P69905 142 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 POU6F2P78424 691 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-205ENST00000595028 RCAN2Q14206 197 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 HSPB2Q16082 182 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 PGS1Q32NB8 556 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 AGBL2Q5U5Z8 902 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 ATG16L1Q676U5 607 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 OR4F3Q6IEY1 312 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 CDC73Q6P1J9 531 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 AAGABQ6PD74 315 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 FIGNL1Q6PIW4 674 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 APOOLQ6UXV4 268 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 MEX3BQ6ZN04 569 aaKnown RBP13.69□□□□□ -0.22
TRIM28-205ENST00000595028 LIX1LQ8IVB5 337 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 TNIP2Q8NFZ5 429 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 OR8J2Q8NGG1 315 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 ZPLD1Q8TCW7 415 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 CDS1Q92903 461 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 TESCQ96BS2 214 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 CHMP6Q96FZ7 201 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 TRIB1Q96RU8 372 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 BTBD2Q9BX70 525 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 ACTRT3Q9BYD9 372 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 DPY30Q9C005 99 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 PIGUQ9H490 435 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 GIN1Q9NXP7 522 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 MED11Q9P086 117 aa13.69□□□□□ -0.22
TRIM28-205ENST00000595028 MARCOQ9UEW3 520 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-205ENST00000595028 RPH3AQ9Y2J0 694 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-205ENST00000595028 MBD3L4A6NDZ8 208 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms