RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 DTNAQ9Y4J8 743 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 GMEB1Q9Y692 573 aa9.51□□□□□ -0.89
SS18-221ENST00000582448 RNF103-CHMP3A0A140T963 221 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 ERAL1O75616 437 aaKnown RBP9.5□□□□□ -0.89
SS18-221ENST00000582448 KLHL18O94889 574 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 IFNA14P01570 189 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 RAP2AP10114 183 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 ACADSP16219 412 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 HOXB9P17482 250 aaPredicted RBP9.5□□□□□ -0.89
SS18-221ENST00000582448 CSNK2A2P19784 350 aaPredicted RBP9.5□□□□□ -0.89
SS18-221ENST00000582448 ECI1P42126 302 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 MAGEA8P43361 318 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 NCBP2P52298 156 aaKnown RBP eCLIP9.5□□□□□ -0.891e-8■■■□□ 16.9
SS18-221ENST00000582448 PER3P56645 1201 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 RIPPLY3P57055 190 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 FOXL2P58012 376 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 MYBPC3Q14896 1274 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 MLC1Q15049 377 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 RGNQ15493 299 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 DEFB134Q4QY38 66 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 TCTE1Q5JU00 501 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 GCNT6Q5T4J0 391 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 OR52E8Q6IFG1 317 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 FRMPD2BQ6IN97 320 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 SLC48A1Q6P1K1 146 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 IZUMO2Q6UXV1 221 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 ZNF793Q6ZN11 406 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 MRGPREQ86SM8 312 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 MCEMP1Q8IX19 187 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 C11orf65Q8NCR3 313 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 PNPT1Q8TCS8 783 aaKnown RBP9.5□□□□□ -0.89
SS18-221ENST00000582448 UTP15Q8TED0 518 aaKnown RBP9.5□□□□□ -0.89
SS18-221ENST00000582448 TM9SF4Q92544 642 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 RNF145Q96MT1 663 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 TRAPPC9Q96Q05 1148 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 SEPHS2Q99611 448 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 PKP2Q99959 881 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 BDH2Q9BUT1 245 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 IKZF5Q9H5V7 419 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 RPF2Q9H7B2 306 aaKnown RBP9.5□□□□□ -0.89
SS18-221ENST00000582448 ANKHQ9HCJ1 492 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 LYRM4Q9HD34 91 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 C8orf4Q9NR00 106 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 ADPRHL2Q9NX46 363 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 PLCL2Q9UPR0 1127 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 ASB4Q9Y574 426 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 SLC22A7Q9Y694 548 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 HIVEP3Q5T1R4 2406 aa9.5□□□□□ -0.89
SS18-221ENST00000582448 ITPR2Q14571 2701 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 LOC105369274A0A096LPK9 316 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 LOC102723532A0A0G2JNH3 316 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 A0A1W2PR48 441 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 TCRBV5S2A0A599 114 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 C5orf58C9J3I9 102 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 GNGT2O14610 69 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 KLF4O43474 513 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 PROM1O43490 865 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 TIPRLO75663 272 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 BMP10O95393 424 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 ZNF682O95780 498 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 AIFM1O95831 613 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 PLA2G1BP04054 148 aaKnown RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 ST6GAL1P15907 406 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 ITGA3P26006 1051 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 HOXC12P31275 282 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 PCGF2P35227 344 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 FOLR3P41439 243 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 TXNL4AP83876 142 aaKnown RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 TNFRSF17Q02223 184 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 HSPB3Q12988 150 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 GAB1Q13480 694 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 GNA13Q14344 377 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 LRRC36Q1X8D7 754 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 ZNF630Q2M218 657 aaPredicted RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 LRRC23Q53EV4 343 aaPredicted RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 DCAF10Q5QP82 559 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.49□□□□□ -0.89
SS18-221ENST00000582448 OGFRL1Q5TC84 451 aaPredicted RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 SZRD1Q7Z422 152 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 FJX1Q86VR8 437 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 GPR135Q8IZ08 494 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 ADGRG5Q8IZF4 528 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 OR4N4Q8N0Y3 316 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 TTC29Q8NA56 475 aaPredicted RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 ST6GALNAC3Q8NDV1 305 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 OR56A1Q8NGH5 318 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 FBXO30Q8TB52 745 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 ADAMTS18Q8TE60 1221 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 NRG4Q8WWG1 115 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 LRTOMTQ8WZ04 291 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 SDCCAG3Q96C92 435 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 SLC47A1Q96FL8 570 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 NPLQ9BXD5 320 aaPredicted RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 MAGIXQ9H6Y5 334 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 C3orf14Q9HBI5 128 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 DCAF13Q9NV06 445 aaKnown RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 OLAHQ9NV23 265 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 P4HTMQ9NXG6 502 aa9.49□□□□□ -0.89
SS18-221ENST00000582448 IFT80Q9P2H3 777 aaPredicted RBP9.49□□□□□ -0.89
SS18-221ENST00000582448 NDOR1Q9UHB4 597 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms