RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 DIO2Q92813 273 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 TP53INP1Q96A56 240 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 KIAA1143Q96AT1 154 aaPredicted RBP23.12■■□□□ 1.29
SHMT1-207ENST00000580002 NXPE2Q96DL1 559 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 MAGIXQ9H6Y5 334 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 IL1RAPQ9NPH3 570 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 FRYQ5TBA9 3013 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 UGT2B11O75310 529 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 SOX30O94993 753 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 EEF1A1P68104 462 aaKnown RBP23.11■■□□□ 1.29
SHMT1-207ENST00000580002 SLC34A1Q06495 639 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 ERMP1Q7Z2K6 904 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 SLC34A3Q8N130 599 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 C17orf47Q8NEP4 570 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 LZICQ8WZA0 190 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 HSPBAP1Q96EW2 488 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 G6PC3Q9BUM1 346 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 VNN3Q9NY84 501 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 NPFFR2Q9Y5X5 522 aa23.11■■□□□ 1.29
SHMT1-207ENST00000580002 ABCB7O75027 752 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 ICOSLGO75144 302 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 UTS2O95399 124 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 LGI1O95970 557 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 MAGEA2P43356 314 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 IST1P53990 364 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 FOXD4Q12950 439 aaPredicted RBP23.1■■□□□ 1.29
SHMT1-207ENST00000580002 NDUFAF6Q330K2 333 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 LPCAT4Q643R3 524 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 B3GNTL1Q67FW5 361 aaPredicted RBP23.1■■□□□ 1.29
SHMT1-207ENST00000580002 LYPD8Q6UX82 237 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 TSPYL5Q86VY4 417 aaPredicted RBP23.1■■□□□ 1.29
SHMT1-207ENST00000580002 CARM1Q86X55 608 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 GATSQ8NAP1 163 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 OR5L2Q8NGL0 311 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 ZNF354BQ96LW1 612 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 PINK1Q9BXM7 581 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 CDCP1Q9H5V8 836 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 NTN4Q9HB63 628 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 POLE3Q9NRF9 147 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 NDUFAF4Q9P032 175 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 ANGPTL2Q9UKU9 493 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 CEP295Q9C0D2 2601 aa23.1■■□□□ 1.29
SHMT1-207ENST00000580002 ACOX3O15254 700 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 HNRNPRO43390 633 aaKnown RBP23.09■■□□□ 1.29
SHMT1-207ENST00000580002 TLX3O43711 291 aaPredicted RBP23.09■■□□□ 1.29
SHMT1-207ENST00000580002 TPST2O60704 377 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 ATP12AP54707 1039 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 FBXW4P57775 412 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 NPTX1Q15818 432 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 RAB43Q86YS6 212 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 SIRT6Q8N6T7 355 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 PROX1Q92786 737 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 SPATA5L1Q9BVQ7 753 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 AGPAT4Q9NRZ5 378 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 BAG5Q9UL15 447 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 NTNG1Q9Y2I2 539 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 FABP3P05413 133 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 PRKAR1AP10644 381 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 LRRC36Q1X8D7 754 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 MRPL2Q5T653 305 aaKnown RBP23.09■■□□□ 1.29
SHMT1-207ENST00000580002 DHRS4L2Q6PKH6 230 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 OR6T1Q8NGN1 323 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 NACC2Q96BF6 587 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 RASL10BQ96S79 203 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 PCDHGA10Q9Y5H3 936 aa23.09■■□□□ 1.29
SHMT1-207ENST00000580002 LAMA5O15230 3695 aa23.08■■□□□ 1.29
SHMT1-207ENST00000580002 DBIP07108 87 aaKnown RBP23.08■■□□□ 1.29
SHMT1-207ENST00000580002 GKN3PP0CG01 181 aa23.08■■□□□ 1.29
SHMT1-207ENST00000580002 PRG2P13727 222 aa23.08■■□□□ 1.29
SHMT1-207ENST00000580002 PRKAR1BP31321 381 aa23.08■■□□□ 1.29
SHMT1-207ENST00000580002 ZNF141Q15928 474 aa23.08■■□□□ 1.29
SHMT1-207ENST00000580002 GEMIN6Q8WXD5 167 aaKnown RBP23.08■■□□□ 1.29
SHMT1-207ENST00000580002 PSMF1Q92530 271 aa23.08■■□□□ 1.29
SHMT1-207ENST00000580002 CNOT9Q92600 299 aaKnown RBP23.08■■□□□ 1.29
SHMT1-207ENST00000580002 EFHD1Q9BUP0 239 aa23.08■■□□□ 1.29
SHMT1-207ENST00000580002 IFT52Q9Y366 437 aa23.08■■□□□ 1.29
SHMT1-207ENST00000580002 MED13Q9UHV7 2174 aa23.08■■□□□ 1.28
SHMT1-207ENST00000580002 EFSO43281 561 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 ADAM11O75078 769 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 ITGA10O75578 1167 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 OXSR1O95747 527 aaPredicted RBP23.07■■□□□ 1.28
SHMT1-207ENST00000580002 CST1P01037 141 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 NID1P14543 1247 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 FASP25445 335 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 IL12BP29460 328 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 CHAF1BQ13112 559 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 CD226Q15762 336 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 SNCBQ16143 134 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 IRAK1BP1Q5VVH5 260 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 TMEM179BQ7Z7N9 219 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 BRIX1Q8TDN6 353 aaKnown RBP23.07■■□□□ 1.28
SHMT1-207ENST00000580002 NODALQ96S42 347 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 KLHDC3Q9BQ90 382 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 FAM117AQ9C073 453 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 CTPS2Q9NRF8 586 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 RHCGQ9UBD6 479 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 ZNF232Q9UNY5 417 aa23.07■■□□□ 1.28
SHMT1-207ENST00000580002 CLOCKO15516 846 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 OIP5O43482 229 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 GUSBP08236 651 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms