RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 NSUN5P2Q63ZY6 315 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 OR4F3Q6IEY1 312 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 CDC73Q6P1J9 531 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 MEX3BQ6ZN04 569 aaKnown RBP21.68■■□□□ 1.06
SHMT1-206ENST00000579558 LIX1LQ8IVB5 337 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 TNIP2Q8NFZ5 429 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 MOAP1Q96BY2 351 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 STACQ99469 402 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 SPOCK3Q9BQ16 436 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 BTBD2Q9BX70 525 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 ACTRT3Q9BYD9 372 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 ENKD1Q9H0I2 346 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 PTGES2Q9H7Z7 377 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 DUSP22Q9NRW4 184 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 MARCOQ9UEW3 520 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-206ENST00000579558 FAF1Q9UNN5 650 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-206ENST00000579558 NUP214P35658 2090 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-206ENST00000579558 HCFC1P51610 2035 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 H0Y3Z8 333 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 SDHDO14521 159 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 ANGPTL1O95841 491 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 KRT16P08779 473 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 HK1P19367 917 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 TIMP3P35625 211 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 STARP49675 285 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 HBA1P69905 142 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 SRYQ05066 204 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 C17orf67Q0P5P2 114 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 GANABQ14697 944 aaKnown RBP21.67■■□□□ 1.06
SHMT1-206ENST00000579558 CCNJQ5T5M9 372 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 APOOLQ6UXV4 268 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 GDF7Q7Z4P5 450 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 ZAR1Q86SH2 424 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 CLECL1Q8IZS7 167 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 OR5AK3PQ8NH89 298 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 CDS1Q92903 461 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 PIGUQ9H490 435 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 MANSC1Q9H8J5 431 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 NPDC1Q9NQX5 325 aaPredicted RBP21.67■■□□□ 1.06
SHMT1-206ENST00000579558 FBXO34Q9NWN3 711 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 GIN1Q9NXP7 522 aa21.67■■□□□ 1.06
SHMT1-206ENST00000579558 CD8B2A6NJW9 211 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 HDAC3O15379 428 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 OXSR1O95747 527 aaPredicted RBP21.66■■□□□ 1.06
SHMT1-206ENST00000579558 IL2RAP01589 272 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 NGFRP08138 427 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 KITP10721 976 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 CHMP24386 653 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 LCN1P31025 176 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 CEACAM8P31997 349 aaPredicted RBP21.66■■□□□ 1.06
SHMT1-206ENST00000579558 LHX2P50458 406 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 SLC25A35Q3KQZ1 300 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 OGFOD2Q6N063 350 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 OR8J2Q8NGG1 315 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 OR4C3Q8NH37 302 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 ZPLD1Q8TCW7 415 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 ADAMTS15Q8TE58 950 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 ARL8AQ96BM9 186 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 TUBA1CQ9BQE3 449 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 G6PC3Q9BUM1 346 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 TRIM8Q9BZR9 551 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 GPATCH2Q9NW75 528 aa21.66■■□□□ 1.06
SHMT1-206ENST00000579558 KIAA1549Q9HCM3 1950 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 MYO9AB2RTY4 2548 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 TRPC5OSA6NMA1 111 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 ALG1L2C9J202 215 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 RNASET2O00584 256 aaKnown RBP21.65■■□□□ 1.06
SHMT1-206ENST00000579558 TBXA2RP21731 343 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 MSX1P28360 303 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 CLNS1AP54105 237 aaKnown RBP21.65■■□□□ 1.06
SHMT1-206ENST00000579558 B3GALT5-AS1P59052 145 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 OCRLQ01968 901 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 RAET1LQ5VY80 246 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 BHLHB9Q6PI77 547 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 GATSQ8NAP1 163 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 ACBD4Q8NC06 268 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 NAXEQ8NCW5 288 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 TESCQ96BS2 214 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 CALHM2Q9HA72 323 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 UBQLN4Q9NRR5 601 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 PCDHGB4Q9UN71 923 aa21.65■■□□□ 1.06
SHMT1-206ENST00000579558 IGLV3-32A0A0A0MS00 114 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 SLCO1B7G3V0H7 640 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 ANKRD28O15084 1053 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 NDUFB5O43674 189 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 GMFGO60234 142 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 ALDOCP09972 364 aaKnown RBP21.64■■□□□ 1.05
SHMT1-206ENST00000579558 HPGDP15428 266 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 ATP6V1C1P21283 382 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 WDR75Q8IWA0 830 aaKnown RBP21.64■■□□□ 1.05
SHMT1-206ENST00000579558 OR4A15Q8NGL6 344 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 C1GALT1C1Q96EU7 318 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 WDR55Q9H6Y2 383 aaPredicted RBP21.64■■□□□ 1.05
SHMT1-206ENST00000579558 HHATLQ9HCP6 504 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 ADGRG4Q8IZF6 3080 aa21.64■■□□□ 1.05
SHMT1-206ENST00000579558 INTS1Q8N201 2190 aaKnown RBP21.64■■□□□ 1.05
SHMT1-206ENST00000579558 GOLGA8QA0A0J9YX86 632 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 GOLGA8OA6NCC3 632 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 MBD3L4A6NDZ8 208 aaPredicted RBP21.63■■□□□ 1.05
SHMT1-206ENST00000579558 MBD3L3A6NE82 208 aaPredicted RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms