RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 COX18Q8N8Q8 333 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 GATSQ8NAP1 163 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 ZPLD1Q8TCW7 415 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 CDS1Q92903 461 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 NUF2Q9BZD4 464 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 CXorf36Q9H7Y0 433 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 PTGES2Q9H7Z7 377 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 CALHM2Q9HA72 323 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 FBXO34Q9NWN3 711 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 ASIC5Q9NY37 505 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 NOTCH2Q04721 2471 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 CD8B2A6NJW9 211 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 DVL2O14641 736 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 OXSR1O95747 527 aaPredicted RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 IGFBP2P18065 325 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 CHMP24386 653 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 SSTR2P30874 369 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 LHX2P50458 406 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 AGFG1P52594 562 aaKnown RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 ZNF136P52737 540 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 B3GALT5-AS1P59052 145 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 MAGOHP61326 146 aaKnown RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 POU6F2P78424 691 aaPredicted RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 C17orf67Q0P5P2 114 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 SNTB1Q13884 538 aaKnown RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 OR4F3Q6IEY1 312 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 DMRTC2Q8IXT2 367 aaPredicted RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 NATD1Q8N6N6 113 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 C9orf106Q8NAJ2 232 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 RELL2Q8NC24 303 aaPredicted RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 OR5M1Q8NGP8 315 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 OR4C3Q8NH37 302 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 OR5AK3PQ8NH89 298 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 FAM110BQ8TC76 370 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 TREX2Q9BQ50 279 aaPredicted RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 DPY30Q9C005 99 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 BHLHE41Q9C0J9 482 aaPredicted RBP14.19□□□□□ -0.14
VPS39-203ENST00000561797 TMBIM4Q9HC24 238 aa14.19□□□□□ -0.14
VPS39-203ENST00000561797 MBD3L4A6NDZ8 208 aaPredicted RBP14.18□□□□□ -0.14
VPS39-203ENST00000561797 MBD3L3A6NE82 208 aaPredicted RBP14.18□□□□□ -0.14
VPS39-203ENST00000561797 MBD3L5A6NJ08 208 aaPredicted RBP14.18□□□□□ -0.14
VPS39-203ENST00000561797 CLCA1A8K7I4 914 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 LBPP18428 481 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 SOAT1P35610 550 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 DGKQP52824 942 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 DLX5P56178 289 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 CLDN18P56856 261 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 TLE4Q04727 773 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 RAET1LQ5VY80 246 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 CDC73Q6P1J9 531 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 UBQLNLQ8IYU4 475 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 CLECL1Q8IZS7 167 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 KIRREL3Q8IZU9 778 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 OR56A1Q8NGH5 318 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 MBD3L2Q8NHZ7 208 aaPredicted RBP14.18□□□□□ -0.14
VPS39-203ENST00000561797 ADAMTS15Q8TE58 950 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 BTBD2Q9BX70 525 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 ACTRT3Q9BYD9 372 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 PIGUQ9H490 435 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 HAO1Q9UJM8 370 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 FAF1Q9UNN5 650 aaPredicted RBP14.18□□□□□ -0.14
VPS39-203ENST00000561797 MPDZO75970 2070 aa14.18□□□□□ -0.14
VPS39-203ENST00000561797 HEATR5AQ86XA9 2040 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 NDUFB5O43674 189 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 TMIGD3P0DMS9 266 aaPredicted RBP14.17□□□□□ -0.14
VPS39-203ENST00000561797 HPGDP15428 266 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 ZNF708P17019 499 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 POU3F2P20265 443 aaPredicted RBP14.17□□□□□ -0.14
VPS39-203ENST00000561797 TBXA2RP21731 343 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 CTSSP25774 331 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 UQCRC1P31930 480 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 C21orf58P58505 322 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 KRTAP10-9P60411 292 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 HBA1P69905 142 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 GANABQ14697 944 aaKnown RBP14.17□□□□□ -0.14
VPS39-203ENST00000561797 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.17□□□□□ -0.14
VPS39-203ENST00000561797 EXOSC6Q5RKV6 272 aaKnown RBP14.17□□□□□ -0.14
VPS39-203ENST00000561797 POMZP3Q6PJE2 187 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 CHMP1BQ7LBR1 199 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 PSMA8Q8TAA3 256 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 SFXN5Q8TD22 340 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 C1GALT1C1Q96EU7 318 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 C14orf79Q96F83 325 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 LURAP1Q96LR2 239 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 STACQ99469 402 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 G6PC3Q9BUM1 346 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 MEAF6Q9HAF1 191 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 UBQLN4Q9NRR5 601 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 DUSP22Q9NRW4 184 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 GIN1Q9NXP7 522 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 NKIRAS1Q9NYS0 192 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 ZNF629Q9UEG4 869 aaPredicted RBP14.17□□□□□ -0.14
VPS39-203ENST00000561797 VDAC3Q9Y277 283 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 ZNF337Q9Y3M9 751 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 KCNE3Q9Y6H6 103 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 APCP25054 2843 aa14.17□□□□□ -0.14
VPS39-203ENST00000561797 ABCA12Q86UK0 2595 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 NPIPA5A0A0B4J1W7 369 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 OR2M5A3KFT3 312 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 SHISA8B8ZZ34 492 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms