RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 PLEKHF2Q9H8W4 249 aa13.2□□□□□ -0.3
SHMT2-235ENST00000557740 SH3BP4Q9P0V3 963 aa13.2□□□□□ -0.3
SHMT2-235ENST00000557740 ZNF337Q9Y3M9 751 aa13.2□□□□□ -0.3
SHMT2-235ENST00000557740 MPDZO75970 2070 aa13.2□□□□□ -0.3
SHMT2-235ENST00000557740 UQCRHLA0A096LP55 91 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 TRIM13O60858 407 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 IGKV1D-16P01601 117 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 LINC00032P0C843 101 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 DDX5P17844 614 aaKnown RBP13.19□□□□□ -0.3
SHMT2-235ENST00000557740 KCNJ5P48544 419 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 SUCLG1P53597 346 aaKnown RBP13.19□□□□□ -0.3
SHMT2-235ENST00000557740 MANFP55145 182 aaKnown RBP13.19□□□□□ -0.3
SHMT2-235ENST00000557740 PRR5P85299 388 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 SLC18A2Q05940 514 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 C17orf67Q0P5P2 114 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 FGFBP1Q14512 234 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 PON3Q15166 354 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 GALNTL6Q49A17 601 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 ZNF385BQ569K4 471 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 KANK2Q63ZY3 851 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 PPP4R4Q6NUP7 873 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 RNF165Q6ZSG1 346 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 HOMEZQ8IX15 550 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 DDIASQ8IXT1 998 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 CDRT4Q8N9R6 151 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 NUP43Q8NFH3 380 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 FNDC9Q8TBE3 224 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 STARD4Q96DR4 205 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 PGM2Q96G03 612 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 ZNF845Q96IR2 970 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-235ENST00000557740 FCRL1Q96LA6 429 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 SLC39A3Q9BRY0 314 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 MED18Q9BUE0 208 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 GATA5Q9BWX5 397 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-235ENST00000557740 OPN3Q9H1Y3 402 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-235ENST00000557740 NEUROD4Q9HD90 331 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 STOML1Q9UBI4 398 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 TMED5Q9Y3A6 229 aa13.19□□□□□ -0.3
SHMT2-235ENST00000557740 MAP1AP78559 2803 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-235ENST00000557740 IGLV3-32A0A0A0MS00 114 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 EMC8O43402 210 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 NDUFB5O43674 189 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 TBX19O60806 448 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 NKX2-2O95096 273 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 POU2F1P14859 743 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 HPCAL1P37235 193 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 CD79BP40259 229 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 KIR2DL2P43627 348 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-235ENST00000557740 ASMTP46597 345 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 CLDN15P56746 228 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 CLDN20P56880 219 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 FAM27E3Q08E93 113 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 PDE7AQ13946 482 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 SGCBQ16585 318 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 Q6ZSR9 355 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 BTLAQ7Z6A9 289 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 GALNT10Q86SR1 603 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 EXOC3L1Q86VI1 746 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 METTL25Q8N6Q8 603 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 OR6Y1Q8NGX8 325 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHMT2-235ENST00000557740 JADE3Q92613 823 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 APOPT1Q96IL0 206 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 TUBB1Q9H4B7 451 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 RNF122Q9H9V4 155 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 EML4Q9HC35 981 aaKnown RBP13.18□□□□□ -0.3
SHMT2-235ENST00000557740 ACSS1Q9NUB1 689 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-235ENST00000557740 KLHL28Q9NXS3 571 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 ZNF226Q9NYT6 803 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 BAIAP2L1Q9UHR4 511 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 VDAC3Q9Y277 283 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 DNAJC15Q9Y5T4 150 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 AP4B1Q9Y6B7 739 aa13.18□□□□□ -0.3
SHMT2-235ENST00000557740 ZFHX3Q15911 3703 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 FLNAP21333 2647 aaKnown RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 A0A087WZY1 265 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 TLDC2A0PJX2 215 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 SHISA8B8ZZ34 492 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 ALG1L2C9J202 215 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 EIF1AYO14602 144 aaKnown RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 LSM1O15116 133 aaKnown RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 OXSR1O95747 527 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 NGFRP08138 427 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 ACP2P11117 423 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 HPGDP15428 266 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 ZNF17P17021 662 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 MAPK1P28482 360 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 PCYT1AP49585 367 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 ZNF41P51814 821 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 ADAM8P78325 824 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 RFTN2Q52LD8 501 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 MFSD12Q6NUT3 480 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 ZNF474Q6S9Z5 364 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 APOOLQ6UXV4 268 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 R3HCC1LQ7Z5L2 792 aaKnown RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 COX18Q8N8Q8 333 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 GATSQ8NAP1 163 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 TWIST2Q8WVJ9 160 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 HOXB13Q92826 284 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 MTERF3Q96E29 417 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms