RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 WDR92Q96MX6 357 aa13.93□□□□□ -0.18
CUX1-215ENST00000556210 ATP13A2Q9NQ11 1180 aa13.93□□□□□ -0.18
CUX1-215ENST00000556210 MED31Q9Y3C7 131 aa13.93□□□□□ -0.18
CUX1-215ENST00000556210 PIAS3Q9Y6X2 628 aa13.93□□□□□ -0.18
CUX1-215ENST00000556210 RTTNQ86VV8 2226 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 HMX3A6NHT5 357 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 LINC01565O15544 149 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 NARSO43776 548 aaKnown RBP13.92□□□□□ -0.18
CUX1-215ENST00000556210 DHFRP00374 187 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 CHRM4P08173 479 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 AKT2P31751 481 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 SRSF5Q13243 272 aaKnown RBP13.92□□□□□ -0.18
CUX1-215ENST00000556210 LRRC20Q8TCA0 184 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 SLC22A18Q96BI1 424 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 WFDC6Q9BQY6 131 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 MAFFQ9ULX9 164 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 SOCS6O14544 535 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 CSO75390 466 aaKnown RBP13.92□□□□□ -0.18
CUX1-215ENST00000556210 GZMMP51124 257 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 ZNF33BQ06732 778 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 RPA4Q13156 261 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 INSL4Q14641 139 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 CDK10Q15131 360 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 PRSS53Q2L4Q9 553 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 FAHD1Q6P587 224 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 LAS2Q8IYD9 372 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 VWA5B2Q8N398 1253 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 APH1BQ8WW43 257 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 ZMYND19Q96E35 227 aaPredicted RBP13.92□□□□□ -0.18
CUX1-215ENST00000556210 CNRIP1Q96F85 164 aaPredicted RBP13.92□□□□□ -0.18
CUX1-215ENST00000556210 RNF121Q9H920 327 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 EXTL2Q9UBQ6 330 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 STUB1Q9UNE7 303 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 EXO1Q9UQ84 846 aaKnown RBP13.92□□□□□ -0.18
CUX1-215ENST00000556210 PPIL1Q9Y3C6 166 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 KLK4Q9Y5K2 254 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 A0A087WUU8 490 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 PPP2CBP62714 309 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 PPP2CAP67775 309 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 MAT1AQ00266 395 aaKnown RBP13.92□□□□□ -0.18
CUX1-215ENST00000556210 MAB21L1Q13394 359 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 E2F2Q14209 437 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 UBXN2BQ14CS0 331 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 ZNF793Q6ZN11 406 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 ABHD13Q7L211 337 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 CSNK1A1LQ8N752 337 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 RPLP0P6Q8NHW5 317 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 PHOSPHO1Q8TCT1 267 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 DEDD2Q8WXF8 326 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 FOXN4Q96NZ1 517 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 CHIAQ9BZP6 476 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 COQ3Q9NZJ6 369 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 GNG8Q9UK08 70 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 SPTBN2O15020 2390 aa13.92□□□□□ -0.18
CUX1-215ENST00000556210 PRSS38A1L453 326 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 CLEC3AO75596 197 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 HLA-DPB1P04440 258 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 TGFBR2P37173 567 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 BICRALQ6AI39 1079 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 UBQLNLQ8IYU4 475 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 GPR32P1Q8NGA4 272 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 OR2A1Q8NGT9 310 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 GNPDA2Q8TDQ7 276 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 SPRYD4Q8WW59 207 aaPredicted RBP13.91□□□□□ -0.18
CUX1-215ENST00000556210 TMEM38AQ9H6F2 299 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 PELI2Q9HAT8 420 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 ZNF224Q9NZL3 707 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 I3L521 148 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 CHST10O43529 356 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 HIST1H2ABP04908 130 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 NDUFV2P19404 249 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 ACVR2AP27037 513 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 APEX1P27695 318 aaKnown RBP13.91□□□□□ -0.18
CUX1-215ENST00000556210 EPHA5P54756 1037 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 DSG2Q14126 1118 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 OTPQ5XKR4 325 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 ABHD17CQ6PCB6 329 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 SHISA6Q6ZSJ9 500 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 Q6ZSR6 202 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 HIST3H2AQ7L7L0 130 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 OR9A4Q8NGU2 314 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 OR1E3Q8WZA6 343 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 HIST1H2ACQ93077 130 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 SRA1Q9HD15 236 aaKnown RBP13.91□□□□□ -0.18
CUX1-215ENST00000556210 MRPS33Q9Y291 106 aaKnown RBP13.91□□□□□ -0.18
CUX1-215ENST00000556210 A3GALT2U3KPV4 340 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 CDC14CA4D256 554 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 RAD1O60671 282 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 CRYZL1O95825 349 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 ERP29P30040 261 aaKnown RBP13.91□□□□□ -0.18
CUX1-215ENST00000556210 CD6P30203 668 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 MRPL19P49406 292 aaKnown RBP13.91□□□□□ -0.18
CUX1-215ENST00000556210 WNT4P56705 351 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 CEACAM19Q7Z692 300 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 IL17RDQ8NFM7 739 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 OSTF1Q92882 214 aa13.91□□□□□ -0.18
CUX1-215ENST00000556210 INMT-MINDY4F8WBC2 141 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 DSCR3O14972 297 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 HOXC11O43248 304 aaPredicted RBP13.9□□□□□ -0.18
CUX1-215ENST00000556210 HPGDSO60760 199 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms