RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 NKIRAS1Q9NYS0 192 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 TAS2R10Q9NYW0 307 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 PPP4R1LQ9P1A2 415 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 CD8B2A6NJW9 211 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 FAM47E-STBD1D6RA91 191 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 SCO2O43819 266 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 OXSR1O95747 527 aaPredicted RBP12.87□□□□□ -0.35
USP28-209ENST00000540925 ALOX5P09917 674 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 TBXA2RP21731 343 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 CHMP24386 653 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 DPP4P27487 766 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 MSX1P28360 303 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 TIMP3P35625 211 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 PRIM2P49643 509 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 DSCR4P56555 118 aaPredicted RBP12.87□□□□□ -0.35
USP28-209ENST00000540925 LASP1Q14847 261 aaKnown RBP12.87□□□□□ -0.35
USP28-209ENST00000540925 TOMM20Q15388 145 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 TMEM44Q2T9K0 475 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 TTMPQ5BVD1 217 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 ATG16L1Q676U5 607 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 OR4F3Q6IEY1 312 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 MAVSQ7Z434 540 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 MARCH3Q86UD3 253 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 IFNEQ86WN2 208 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 LACC1Q8IV20 430 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 WDR75Q8IWA0 830 aaKnown RBP12.87□□□□□ -0.35
USP28-209ENST00000540925 TRIM42Q8IWZ5 723 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 CLECL1Q8IZS7 167 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 ZNF295-AS1Q8N0V1 137 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 NAXEQ8NCW5 288 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 OR14L1PQ8NHC6 308 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 MOAP1Q96BY2 351 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 TEX37Q96LM6 180 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 UCN2Q96RP3 112 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 YIPF4Q9BSR8 244 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 ACTRT3Q9BYD9 372 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 TRIM8Q9BZR9 551 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 UCK2Q9BZX2 261 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 DSN1Q9H410 356 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 SERHL2Q9H4I8 314 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 AIG1Q9NVV5 245 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 PCNX3Q9H6A9 2034 aa12.87□□□□□ -0.35
USP28-209ENST00000540925 NKX2-6A6NCS4 301 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 MBD3L4A6NDZ8 208 aaPredicted RBP12.86□□□□□ -0.35
USP28-209ENST00000540925 MBD3L3A6NE82 208 aaPredicted RBP12.86□□□□□ -0.35
USP28-209ENST00000540925 MBD3L5A6NJ08 208 aaPredicted RBP12.86□□□□□ -0.35
USP28-209ENST00000540925 ENO4A6NNW6 628 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 NPIPB9F8W1W9 429 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 SOX30O94993 753 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 ANGPTL1O95841 491 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 ZNF708P17019 499 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 ZFP36L2P47974 494 aaKnown RBP12.86□□□□□ -0.35
USP28-209ENST00000540925 CLDN18P56856 261 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 GANABQ14697 944 aaKnown RBP12.86□□□□□ -0.35
USP28-209ENST00000540925 BCL2A1Q16548 175 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 PGS1Q32NB8 556 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 AP1ARQ63HQ0 302 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 FIGNL1Q6PIW4 674 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 SZRD1Q7Z422 152 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 GALNT10Q86SR1 603 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 TNIP2Q8NFZ5 429 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 OR4K17Q8NGC6 315 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 MBD3L2Q8NHZ7 208 aaPredicted RBP12.86□□□□□ -0.35
USP28-209ENST00000540925 DUSP19Q8WTR2 217 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 CDS1Q92903 461 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 C1GALT1C1Q96EU7 318 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 DTNBP1Q96EV8 351 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 OTUB1Q96FW1 271 aaPredicted RBP12.86□□□□□ -0.35
USP28-209ENST00000540925 ATP6V1G3Q96LB4 118 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 DPY30Q9C005 99 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 WDR55Q9H6Y2 383 aaPredicted RBP12.86□□□□□ -0.35
USP28-209ENST00000540925 CALHM2Q9HA72 323 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 SDHAF3Q9NRP4 125 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 ALKBH4Q9NXW9 302 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 MED11Q9P086 117 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 SNX8Q9Y5X2 465 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 GPR45Q9Y5Y3 372 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 KCNE3Q9Y6H6 103 aa12.86□□□□□ -0.35
USP28-209ENST00000540925 POLQO75417 2590 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 C2CD3Q4AC94 2353 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 PRSS51A0A1B0GVH4 220 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 A0A1W2PQD3 144 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 TRPC5OSA6NMA1 111 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 SLCO1B7G3V0H7 640 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 EPHA3P29320 983 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 IL12AP29459 219 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 RFX3P48380 749 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 CLNS1AP54105 237 aaKnown RBP12.85□□□□□ -0.35
USP28-209ENST00000540925 CLDN15P56746 228 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 POU6F2P78424 691 aaPredicted RBP12.85□□□□□ -0.35
USP28-209ENST00000540925 C17orf67Q0P5P2 114 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 STX5Q13190 355 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 TP53BP2Q13625 1128 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 DPY19L1Q2PZI1 675 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 GLYR1Q49A26 553 aaPredicted RBP12.85□□□□□ -0.35
USP28-209ENST00000540925 SPANXN4Q5MJ08 99 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 CCNJQ5T5M9 372 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 SPATA19Q7Z5L4 167 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 MCEMP1Q8IX19 187 aa12.85□□□□□ -0.35
USP28-209ENST00000540925 COX18Q8N8Q8 333 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms