RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CD8B2A6NJW9 211 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 HSPB2A8KAH6 182 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 SNNO75324 88 aaPredicted RBP13.41□□□□□ -0.26
USP28-204ENST00000537642 CHMP24386 653 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 CCT3P49368 545 aaKnown RBP13.41□□□□□ -0.26
USP28-204ENST00000537642 CLK3P49761 638 aaKnown RBP13.41□□□□□ -0.26
USP28-204ENST00000537642 LHX2P50458 406 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 DSCR4P56555 118 aaPredicted RBP13.41□□□□□ -0.26
USP28-204ENST00000537642 CASP8Q14790 479 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 SF3B4Q15427 424 aaKnown RBP eCLIP13.41□□□□□ -0.26
USP28-204ENST00000537642 HSPB2Q16082 182 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.41□□□□□ -0.26
USP28-204ENST00000537642 PGS1Q32NB8 556 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 SLC25A35Q3KQZ1 300 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 CDC73Q6P1J9 531 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 AAGABQ6PD74 315 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 ENPP6Q6UWR7 440 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 MED12LQ86YW9 2145 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 OR4C3Q8NH37 302 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 ZPLD1Q8TCW7 415 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 JADE3Q92613 823 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 SFXN2Q96NB2 322 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 TUBA1CQ9BQE3 449 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 TBL1XR1Q9BZK7 514 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 GPATCH2Q9NW75 528 aa13.41□□□□□ -0.26
USP28-204ENST00000537642 CREBBPQ92793 2442 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 IGLV3-32A0A0A0MS00 114 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 MBD3L4A6NDZ8 208 aaPredicted RBP13.4□□□□□ -0.26
USP28-204ENST00000537642 MBD3L3A6NE82 208 aaPredicted RBP13.4□□□□□ -0.26
USP28-204ENST00000537642 MBD3L5A6NJ08 208 aaPredicted RBP13.4□□□□□ -0.26
USP28-204ENST00000537642 ALG1L2C9J202 215 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 H0Y3Z8 333 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 ANKRD28O15084 1053 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 CFLARO15519 480 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 OXSR1O95747 527 aaPredicted RBP13.4□□□□□ -0.26
USP28-204ENST00000537642 ANGPTL1O95841 491 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 NGFRP08138 427 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 LBPP18428 481 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 CLDN18P56856 261 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 HBA1P69905 142 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 SRYQ05066 204 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 TP53BP2Q13625 1128 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 CCNJQ5T5M9 372 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 OR4F3Q6IEY1 312 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 POMZP3Q6PJE2 187 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 ADGRE4PQ86SQ3 457 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 LRRC34Q8IZ02 419 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 CLECL1Q8IZS7 167 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 COX18Q8N8Q8 333 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 RELL2Q8NC24 303 aaPredicted RBP13.4□□□□□ -0.26
USP28-204ENST00000537642 OR56A1Q8NGH5 318 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 MBD3L2Q8NHZ7 208 aaPredicted RBP13.4□□□□□ -0.26
USP28-204ENST00000537642 SFXN5Q8TD22 340 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 CDS1Q92903 461 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 STACQ99469 402 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 G6PC3Q9BUM1 346 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 BTBD2Q9BX70 525 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 ACTRT3Q9BYD9 372 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 DPY30Q9C005 99 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 PIGUQ9H490 435 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 CALHM2Q9HA72 323 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 NEUROD4Q9HD90 331 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 DUSP22Q9NRW4 184 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 THAP1Q9NVV9 213 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 GIN1Q9NXP7 522 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 NKIRAS1Q9NYS0 192 aa13.4□□□□□ -0.26
USP28-204ENST00000537642 SDHDO14521 159 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 IL2RAP01589 272 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 ZNF708P17019 499 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 HK1P19367 917 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 TBXA2RP21731 343 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 ZNF136P52737 540 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 PHC1P78364 1004 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 POU6F2P78424 691 aaPredicted RBP13.39□□□□□ -0.27
USP28-204ENST00000537642 C17orf67Q0P5P2 114 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 RCAN2Q14206 197 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 GANABQ14697 944 aaKnown RBP13.39□□□□□ -0.27
USP28-204ENST00000537642 SPDYE7PQ495Y7 208 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 PLXDC2Q6UX71 529 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 DMRTC2Q8IXT2 367 aaPredicted RBP13.39□□□□□ -0.27
USP28-204ENST00000537642 C9orf106Q8NAJ2 232 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 OR8J2Q8NGG1 315 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 OR5AK3PQ8NH89 298 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 ARL8AQ96BM9 186 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 C1GALT1C1Q96EU7 318 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 CHMP6Q96FZ7 201 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 PTGES2Q9H7Z7 377 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 KCNE3Q9Y6H6 103 aa13.39□□□□□ -0.27
USP28-204ENST00000537642 LRBAP50851 2863 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 CLCA1A8K7I4 914 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 RNASET2O00584 256 aaKnown RBP13.38□□□□□ -0.27
USP28-204ENST00000537642 NDUFB5O43674 189 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 GMFGO60234 142 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 SCN2BO60939 215 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 ALDOCP09972 364 aaKnown RBP13.38□□□□□ -0.27
USP28-204ENST00000537642 BMP5P22003 454 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 LCN1P31025 176 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 SOAT1P35610 550 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 DLX5P56178 289 aa13.38□□□□□ -0.27
USP28-204ENST00000537642 OCRLQ01968 901 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms