RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 NUP43Q8NFH3 380 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 ACTRT2Q8TDY3 377 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 EGLN2Q96KS0 407 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 TSSK3Q96PN8 268 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 PRPF18Q99633 342 aaKnown RBP13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 CCM2LQ9NUG4 571 aaPredicted RBP13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 ZNF226Q9NYT6 803 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 MED11Q9P086 117 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 DNAJC15Q9Y5T4 150 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 AKAP6Q13023 2319 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 CSMD2Q7Z408 3487 aa13.03□□□□□ -0.32
HMGCS1-203ENST00000507004 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 OR2M5A3KFT3 312 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 NDUFB5O43674 189 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 NME6O75414 186 aaPredicted RBP13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 TNFSF13O75888 250 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 ALOX5P09917 674 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 CD8BP10966 210 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 CD99P14209 185 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 TBXA2RP21731 343 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 RFX3P48380 749 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 STX5Q13190 355 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 SNTB1Q13884 538 aaKnown RBP13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 KEAP1Q14145 624 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 PRSS53Q2L4Q9 553 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 ATP6AP1LQ52LC2 224 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 RFTN2Q52LD8 501 aaPredicted RBP13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 PDSS1Q5T2R2 415 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 EMBQ6PCB8 327 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 MED12LQ86YW9 2145 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 TGIF2LYQ8IUE0 185 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 UBQLNLQ8IYU4 475 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 KIRREL3Q8IZU9 778 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 GCNT2Q8N0V5 402 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 METTL25Q8N6Q8 603 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 LINC01560Q8TB33 94 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 TWIST2Q8WVJ9 160 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 ZBTB8AQ96BR9 441 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 MOAP1Q96BY2 351 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 STACQ99469 402 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 HOXD1Q9GZZ0 328 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 TNFRSF12AQ9NP84 129 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 UBQLN4Q9NRR5 601 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 DUSP22Q9NRW4 184 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 LGALS13Q9UHV8 139 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 ATP6V1HQ9UI12 483 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 FIS1Q9Y3D6 152 aa13.02□□□□□ -0.33
HMGCS1-203ENST00000507004 A0A1W2PQD3 144 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 C7orf72A4D263 438 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 SCDO00767 359 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 SNUPNO95149 360 aaKnown RBP13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 TGM6O95932 706 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 LINC00032P0C843 101 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 BCKDHAP12694 445 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 FOSL1P15407 271 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 ALDH3A1P30838 453 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 CD79BP40259 229 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 PRKAG1P54619 331 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 MAD2L1Q13257 205 aaPredicted RBP13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 SGCBQ16585 318 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 LSM12Q3MHD2 195 aaKnown RBP13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 ARL13AQ5H913 290 aaPredicted RBP13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 MFSD12Q6NUT3 480 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 BHLHB9Q6PI77 547 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 SZRD1Q7Z422 152 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 MTERF4Q7Z6M4 381 aaKnown RBP13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 MARCH3Q86UD3 253 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 WDR75Q8IWA0 830 aaKnown RBP13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 COX18Q8N8Q8 333 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 CNEP1R1Q8N9A8 125 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 OR2T11Q8NH01 316 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 FAM110BQ8TC76 370 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 SLC9A6Q92581 669 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 CAVIN3Q969G5 261 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 ZNF845Q96IR2 970 aaPredicted RBP13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 ZIM3Q96PE6 472 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 FAM111AQ96PZ2 611 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 TMUB1Q9BVT8 246 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 PINK1Q9BXM7 581 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 TUBB1Q9H4B7 451 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 RNF122Q9H9V4 155 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 NEUROD4Q9HD90 331 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 EQTNQ9NQ60 294 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 GLRX2Q9NS18 164 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 ZNF337Q9Y3M9 751 aa13.01□□□□□ -0.33
HMGCS1-203ENST00000507004 GIMAP1-GIMAP5A0A087WTJ2 511 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 UQCRHLA0A096LP55 91 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 H3BML4 177 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 H3BNH8 94 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 SCAMP2O15127 329 aaKnown RBP13□□□□□ -0.33
HMGCS1-203ENST00000507004 SEC14L5O43304 696 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 AKAP10O43572 662 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 SMNDC1O75940 238 aaKnown RBP eCLIP13□□□□□ -0.33
HMGCS1-203ENST00000507004 OXSR1O95747 527 aaPredicted RBP13□□□□□ -0.33
HMGCS1-203ENST00000507004 HRGP04196 525 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 ATP6V1C1P21283 382 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 ME2P23368 584 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 CPOXP36551 454 aa13□□□□□ -0.33
HMGCS1-203ENST00000507004 EIF1P41567 113 aaKnown RBP13□□□□□ -0.33
HMGCS1-203ENST00000507004 ZNF41P51814 821 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms