RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CLK3P49761 638 aaKnown RBP10.9□□□□□ -0.66
CUX1-210ENST00000497815 MEOX1P50221 254 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 CRISP3P54108 245 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 CDK6Q00534 326 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 LIPEQ05469 1076 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 SCARB2Q14108 478 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 GNA13Q14344 377 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 ADRM1Q16186 407 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 C16orf89Q6UX73 402 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 APOOLQ6UXV4 268 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 FRRS1Q6ZNA5 592 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 LRRC74BQ6ZQY2 392 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 SERPINA11Q86U17 422 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 PTOV1Q86YD1 416 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 SLC15A3Q8IY34 581 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 ZZZ3Q8IYH5 903 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 DEFB107AQ8IZN7 70 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 ZNF619Q8N2I2 560 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 RNF148Q8N7C7 305 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 POGLUT1Q8NBL1 392 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 RBM15BQ8NDT2 890 aaKnown RBP10.9□□□□□ -0.66
CUX1-210ENST00000497815 OR2M7Q8NG81 312 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 PNPLA2Q96AD5 504 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 SECISBP2Q96T21 854 aaKnown RBP10.9□□□□□ -0.66
CUX1-210ENST00000497815 FAM173AQ9BQD7 235 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 ANGPTL4Q9BY76 406 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 TBL1XR1Q9BZK7 514 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 SLC38A1Q9H2H9 487 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 SPAG4Q9NPE6 437 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 UBQLN4Q9NRR5 601 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 PACSIN3Q9UKS6 424 aa10.9□□□□□ -0.66
CUX1-210ENST00000497815 CENPVL1A0A0U1RR11 272 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 KLRC4-KLRK1H3BQV0 150 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 GNB5O14775 395 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 GMFGO60234 142 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 KIAA0513O60268 411 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 FADS1O60427 444 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 UGT2B17O75795 530 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 TBXA2RP21731 343 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 LCN1P31025 176 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 PTGDSP41222 190 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 MASP1P48740 699 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 GZMMP51124 257 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 ATP12AP54707 1039 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 PLGLB1Q02325 96 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 INPP5JQ15735 1006 aaPredicted RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 ZNF630Q2M218 657 aaPredicted RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 TBCELQ5QJ74 424 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 PDZK1Q5T2W1 519 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 OR5M10Q6IEU7 315 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 REEP3Q6NUK4 255 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 NET1Q7Z628 596 aaPredicted RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 PACS2Q86VP3 889 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 CALHM3Q86XJ0 350 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 PGAM4Q8N0Y7 254 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 Q8NA96 180 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 ZNF527Q8NB42 609 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 FAM98AQ8NCA5 519 aaKnown RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 C11orf65Q8NCR3 313 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 ZG16BQ96DA0 208 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 ZNF583Q96ND8 569 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 BBC3Q96PG8 261 aaPredicted RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 CDRT15Q96T59 188 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 TREX2Q9BQ50 279 aaPredicted RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 RTN4RQ9BZR6 473 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 HOXD1Q9GZZ0 328 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 TMEM38AQ9H6F2 299 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 PROK2Q9HC23 129 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 POLE3Q9NRF9 147 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 NDE1Q9NXR1 346 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 TUBA8Q9NY65 449 aaPredicted RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 CALML5Q9NZT1 146 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 KCNE5Q9UJ90 142 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 RALYQ9UKM9 306 aaKnown RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 ABCG2Q9UNQ0 655 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 PCDHGA10Q9Y5H3 936 aa10.89□□□□□ -0.67
CUX1-210ENST00000497815 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 NUP214P35658 2090 aaPredicted RBP10.89□□□□□ -0.67
CUX1-210ENST00000497815 A0A0G2JPF8 293 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 ANKRD33BA6NCL7 494 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 FAM166BA8MTA8 275 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 FAM220BPB1ANY3 271 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 HNRNPCL2B2RXH8 293 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 HNRNPCL3B7ZW38 293 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 NPIPB9F8W1W9 429 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 NDUFB5O43674 189 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 HNRNPCL1O60812 293 aaKnown RBP10.88□□□□□ -0.67
CUX1-210ENST00000497815 SNX4O95219 450 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 RASAL1O95294 804 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 PGM3O95394 542 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 ANGPTL1O95841 491 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 HNRNPCL4P0DMR1 293 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 CPOXP36551 454 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 GSK3BP49841 420 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 EEFSECP57772 596 aaKnown RBP10.88□□□□□ -0.67
CUX1-210ENST00000497815 RBBP4Q09028 425 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 SNTA1Q13424 505 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 CD226Q15762 336 aa10.88□□□□□ -0.67
CUX1-210ENST00000497815 MAPK14Q16539 360 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms