RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OR52P1PQ8NH57 321 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 PRAP1Q96NZ9 151 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 IL26Q9NPH9 171 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 F6UZH7 168 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 RPL13AP40429 203 aaKnown RBP12.63□□□□□ -0.39
COL6A3-209ENST00000472056 DYRK1AQ13627 763 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF689Q96CS4 500 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-209ENST00000472056 UHRF1Q96T88 793 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-209ENST00000472056 GAREM1Q9H706 876 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 CRHBPP24387 322 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 CLCNKAP51800 687 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 INHBCP55103 352 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 BTG1P62324 171 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 NPY6RQ99463 290 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 C12orf10Q9HB07 376 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 BACE2Q9Y5Z0 518 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ROBO1Q9Y6N7 1651 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 CPED1A4D0V7 1026 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 FABP6P51161 128 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 TRA2BP62995 288 aaKnown RBP12.63□□□□□ -0.39
COL6A3-209ENST00000472056 PIM3Q86V86 326 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ACOT11Q8WXI4 607 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF442Q9H7R0 627 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 SLC2A4RGQ9NR83 387 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 SLC35A3Q9Y2D2 325 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 A0A1W2PPL8 197 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 SLC43A1O75387 559 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 INHAP05111 366 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 CAV2P51636 162 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 APOFQ13790 326 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 SOHLH1Q5JUK2 328 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 VASH1Q7L8A9 365 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-209ENST00000472056 GAB3Q8WWW8 586 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 TAC3Q9UHF0 121 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 SMCHD1A6NHR9 2005 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 UNCXA6NJT0 531 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 PEX10O60683 326 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 UBL3O95164 117 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 CKMT1AP12532 417 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 IRF2P14316 349 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 RBM39Q14498 530 aaKnown RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 SERPINA12Q8IW75 414 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 SLAMF7Q9NQ25 335 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 FCF1Q9Y324 198 aaKnown RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 SLC35E2BP0CK96 405 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 PRKAR1BP31321 381 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 SPCS2Q15005 226 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 CASD1Q96PB1 797 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 TXNL4BQ9NX01 149 aaKnown RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 PADI3Q9ULW8 664 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 MYBPHLA2RUH7 354 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 GPR25O00155 361 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ARHGAP33O14559 1287 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 STK19P49842 368 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 MSS51Q4VC12 460 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF776Q68DI1 518 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ABHD12BQ7Z5M8 362 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 SLC2A13Q96QE2 648 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 SEMA4CQ9C0C4 833 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 BEX1Q9HBH7 125 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 PCDHA9Q9Y5H5 950 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ITGB4P16144 1822 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 INTS1Q8N201 2190 aaKnown RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 TCRBV7S3A2A0A539 114 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 CLIC3O95833 236 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 TK1P04183 234 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 C1GALT1C1LP0DN25 315 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF136P52737 540 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ARHGAP19Q14CB8 494 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 PARP16Q8N5Y8 322 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 TMEM156Q8N614 296 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 NDUFB2O95178 105 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 GPR50Q13585 617 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ACSS2Q9NR19 701 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 SCML1Q9UN30 329 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 MEN1O00255 615 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 F10P00742 488 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ALDOBP05062 364 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 OR12D1P0DN82 309 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 CPOXP36551 454 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 HENMT1Q5T8I9 393 aaKnown RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 CELF5Q8N6W0 485 aaKnown RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 MITD1Q8WV92 249 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 PATZ1Q9HBE1 687 aaKnown RBP12.62□□□□□ -0.39
COL6A3-209ENST00000472056 POLHQ9Y253 713 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 TMEM212A6NML5 194 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 ADH7P40394 386 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 BDH1Q02338 343 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 FBXL22Q6P050 247 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 NDUFAF7Q7L592 441 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 C14orf80Q86SX3 495 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 PLPP5Q8NEB5 264 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 OR6F1Q8NGZ6 308 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 SEMA4GQ9NTN9 838 aa12.62□□□□□ -0.39
COL6A3-209ENST00000472056 PROS1P07225 676 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 CNN3Q15417 329 aaKnown RBP12.61□□□□□ -0.39
COL6A3-209ENST00000472056 SF3B4Q15427 424 aaKnown RBP eCLIP12.61□□□□□ -0.39
COL6A3-209ENST00000472056 SOWAHAQ2M3V2 549 aa12.61□□□□□ -0.39
COL6A3-209ENST00000472056 EML3Q32P44 896 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms