RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 TPD52P55327 224 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SLC37A1P57057 533 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 TAS2R41P59536 307 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 PSG6Q00889 435 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 GPR68Q15743 365 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 MAPK11Q15759 364 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 NRF1Q16656 503 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.52□□□□□ -1.536e-7■■□□□ 14.3
HMGB3-202ENST00000419110 CYP27C1Q4G0S4 372 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 OTUD3Q5T2D3 398 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 CCNJQ5T5M9 372 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 MRPL2Q5T653 305 aaKnown RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 KRT80Q6KB66 452 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 PPP4R4Q6NUP7 873 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 C6orf15Q6UXA7 325 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 CPEB2Q7Z5Q1 589 aaKnown RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 ANKRD37Q7Z713 158 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 VRK2Q86Y07 508 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 RAB43Q86YS6 212 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 C9orf40Q8IXQ3 194 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 CMIPQ8IY22 773 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SHISA5Q8N114 240 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SLC34A3Q8N130 599 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 TMCO5AQ8N6Q1 288 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF615Q8N8J6 731 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 ATG16L2Q8NAA4 619 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SLC38A9Q8NBW4 561 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SIMC1Q8NDZ2 872 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 C17orf47Q8NEP4 570 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 GPR32P1Q8NGA4 272 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 OR10G2Q8NGC3 310 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 OR2Y1Q8NGV0 311 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SLC22A8Q8TCC7 542 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 PTPMT1Q8WUK0 201 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 APOBEC4Q8WW27 367 aaKnown RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SLC35A4Q96G79 324 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SENP5Q96HI0 755 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 NAF1Q96HR8 494 aaKnown RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 LCORQ96JN0 433 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 C7orf34Q96L11 122 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 ZNF597Q96LX8 424 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SDF2Q99470 211 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 ARHGAP9Q9BRR9 750 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 ADI1Q9BV57 179 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 HOXD1Q9GZZ0 328 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 QRSL1Q9H0R6 528 aaKnown RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 COQ10BQ9H8M1 238 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SLC22A11Q9NSA0 550 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 KRT84Q9NSB2 600 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 PGPEP1Q9NXJ5 209 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 NDUFAF4Q9P032 175 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 CDV3Q9UKY7 258 aaKnown RBP5.52□□□□□ -1.53
HMGB3-202ENST00000419110 MKLN1Q9UL63 735 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 SLC35A3Q9Y2D2 325 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 LYVE1Q9Y5Y7 322 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 B3GALT1Q9Y5Z6 326 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 AP4B1Q9Y6B7 739 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 U3KQV3 271 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 WDFY4Q6ZS81 3184 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 DOCK10Q96BY6 2186 aa5.52□□□□□ -1.53
HMGB3-202ENST00000419110 AHCTF1Q8WYP5 2266 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CNOT1A5YKK6 2376 aaKnown RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 NPIPA5A0A0B4J1W7 369 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 OR2W5A6NFC9 320 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 C21orf140B9A014 251 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 PROB1E7EW31 1015 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 NPIPA7E9PJI5 369 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 H3BNH8 94 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 STMND1H3BQB6 276 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 PDLIM1O00151 329 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 FMO6PO60774 539 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CNOT3O75175 753 aaKnown RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 NME6O75414 186 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 DIRAS1O95057 198 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CCNB2O95067 398 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 OR5F1O95221 314 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 OXSR1O95747 527 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 IL33O95760 270 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 LGI1O95970 557 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ADAP00813 363 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CAPNS1P04632 268 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ALPLP05186 524 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 RAB40ALP0C0E4 278 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 NPIPA8P0DM63 369 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CT45A8P0DMV1 189 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CT45A9P0DMV2 189 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ENDOUP21128 410 aaKnown RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 S1PR1P21453 382 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 ELAVL4P26378 380 aaKnown RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CD82P27701 267 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 SOX18P35713 384 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 CAPGP40121 348 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 PPICP45877 212 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 NOVA1P51513 510 aaKnown RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 SLC26A5P58743 744 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 EEF1A1P68104 462 aaKnown RBP5.51□□□□□ -1.53
HMGB3-202ENST00000419110 GABREP78334 506 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 PPP2R2BQ00005 443 aa5.51□□□□□ -1.53
HMGB3-202ENST00000419110 MED21Q13503 144 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms