RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CXorf21Q9HAI6 301 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 CLK4Q9HAZ1 481 aaKnown RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 EXOSC4Q9NPD3 245 aaKnown RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 C20orf141Q9NUB4 165 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 ZNF232Q9UNY5 417 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PLD2O14939 933 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 PLGP00747 810 aaPredicted RBP9.77□□□□□ -0.84
VPS11-208ENST00000621676 IFNA14P01570 189 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 STSP08842 583 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 MRPL3P09001 348 aaKnown RBP9.77□□□□□ -0.84
VPS11-208ENST00000621676 GRPRP30550 384 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 RPS27P42677 84 aaKnown RBP9.77□□□□□ -0.84
VPS11-208ENST00000621676 PPP2R2BQ00005 443 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 PTGES3Q15185 160 aaKnown RBP9.77□□□□□ -0.84
VPS11-208ENST00000621676 C3orf38Q5JPI3 329 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 MED25Q71SY5 747 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 PEX5LQ8IYB4 626 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 DNAJC22Q8N4W6 341 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 DNASE2BQ8WZ79 361 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 ULBP3Q9BZM4 244 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 OR10A5Q9H207 317 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 CHST8Q9H2A9 424 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 RNF167Q9H6Y7 350 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 MRPS33Q9Y291 106 aaKnown RBP9.77□□□□□ -0.84
VPS11-208ENST00000621676 ENPP4Q9Y6X5 453 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 RALGAPA1Q6GYQ0 2036 aa9.77□□□□□ -0.84
VPS11-208ENST00000621676 KLHL33A6NCF5 533 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 A6NL46 340 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 BLOC1S5-TXNDC5H3BN57 136 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 SMIM18P0DKX4 95 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 NOS3P29474 1203 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 CENPAP49450 140 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 FOXK1P85037 733 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 PSG6Q00889 435 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 DUSP8Q13202 625 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 VEZF1Q14119 521 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 LIN52Q52LA3 116 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 BHLHB9Q6PI77 547 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 SAP25Q8TEE9 199 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 RPL3LQ92901 407 aaKnown RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 TM4SF19Q96DZ7 209 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 RTN4RQ9BZR6 473 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 PNPLA3Q9NST1 481 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 RPH3AQ9Y2J0 694 aaPredicted RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 ARID1AO14497 2285 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 SMG1Q96Q15 3661 aaKnown RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 TLN1Q9Y490 2541 aaKnown RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 HCRTR2O43614 444 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 TOP3AQ13472 1001 aaPredicted RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 E2F2Q14209 437 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 MED22Q15528 200 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 ZNHIT3Q15649 155 aaPredicted RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 SNAPC1Q16533 368 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 COLEC12Q5KU26 742 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 ZER1Q7Z7L7 766 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 HIPK1Q86Z02 1210 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 DTWD2Q8NBA8 298 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 ZNF563Q8TA94 476 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 BTBD9Q96Q07 612 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 PAPOLBQ9NRJ5 636 aaKnown RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 PAK1IP1Q9NWT1 392 aaPredicted RBP9.77□□□□□ -0.85
VPS11-208ENST00000621676 CORO2BQ9UQ03 480 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 CHST2Q9Y4C5 530 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 ZFYVE26Q68DK2 2539 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 ADGRG4Q8IZF6 3080 aa9.77□□□□□ -0.85
VPS11-208ENST00000621676 A0A087WUU8 490 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 IDSB3KWA1 339 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 OIP5O43482 229 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 IGLV3-19P01714 112 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 AHCYP23526 432 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 MMP11P24347 488 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 OTX2P32243 289 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 POU6F2P78424 691 aaPredicted RBP9.76□□□□□ -0.85
VPS11-208ENST00000621676 TGIF1Q15583 401 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 PRICKLE4Q2TBC4 344 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 FRRS1Q6ZNA5 592 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 UTS2BQ765I0 119 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 PATL1Q86TB9 770 aaKnown RBP9.76□□□□□ -0.85
VPS11-208ENST00000621676 MARCH3Q86UD3 253 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 SNX29P2Q8IUI4 249 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 CCDC103Q8IW40 242 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 OR56A1Q8NGH5 318 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 GAB3Q8WWW8 586 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 STON2Q8WXE9 905 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 MTERF3Q96E29 417 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 VN1R1Q9GZP7 353 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 CCDC86Q9H6F5 360 aaKnown RBP9.76□□□□□ -0.85
VPS11-208ENST00000621676 ACSS1Q9NUB1 689 aaPredicted RBP9.76□□□□□ -0.85
VPS11-208ENST00000621676 LYARQ9NX58 379 aaKnown RBP9.76□□□□□ -0.85
VPS11-208ENST00000621676 KLHL28Q9NXS3 571 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 FBXL4Q9UKA2 621 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 SPTBN1Q01082 2364 aaKnown RBP9.76□□□□□ -0.85
VPS11-208ENST00000621676 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 IGHV5-10-1A0A0J9YXX1 117 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 C11orf98E9PRG8 122 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 ZNHIT1O43257 154 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 NUDT21O43809 227 aaKnown RBP9.76□□□□□ -0.85
VPS11-208ENST00000621676 DOK2O60496 412 aa9.76□□□□□ -0.85
VPS11-208ENST00000621676 HOXC4P09017 264 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms