RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 NIPAL2Q9H841 368 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 TM7SF3Q9NS93 570 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 GNG8Q9UK08 70 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 FXYD6-FXYD2A0A087WZ82 144 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 PLA2G10O15496 165 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 OR10H2O60403 315 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 ASGR2P07307 311 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SYPP08247 313 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 PEPDP12955 493 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 HPGDP15428 266 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SYN1P17600 705 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 GABRB1P18505 474 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 CCR6P51684 374 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 RGS1Q08116 209 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 MPEG1Q2M385 716 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 ASTLQ6HA08 431 aaPredicted RBP11.83□□□□□ -0.52
LIG1-221ENST00000613670 NKAIN4Q8IVV8 208 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SLC44A3Q8N4M1 653 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SRFBP1Q8NEF9 429 aaKnown RBP11.83□□□□□ -0.52
LIG1-221ENST00000613670 COQ8AQ8NI60 647 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 MAP6Q96JE9 813 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 CCDC3Q9BQI4 270 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 GTPBP2Q9BX10 602 aaKnown RBP11.83□□□□□ -0.52
LIG1-221ENST00000613670 FXYD6Q9H0Q3 95 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SLAMF7Q9NQ25 335 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 OR6C2Q9NZP2 312 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 PLEKHB1Q9UF11 243 aaPredicted RBP11.83□□□□□ -0.52
LIG1-221ENST00000613670 UBQLN2Q9UHD9 624 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 ALPK2Q86TB3 2170 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 A0A1B0GVT2 93 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SEMG1P04279 462 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 CERS1P27544 350 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 GRPRP30550 384 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 SOX2P48431 317 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 AKR1D1P51857 326 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 PITPNAQ00169 270 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 CDKN3Q16667 212 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 PSRC1Q6PGN9 363 aaPredicted RBP11.83□□□□□ -0.52
LIG1-221ENST00000613670 GRASPQ7Z6J2 395 aaPredicted RBP11.83□□□□□ -0.52
LIG1-221ENST00000613670 LSRQ86X29 649 aaPredicted RBP11.83□□□□□ -0.52
LIG1-221ENST00000613670 OR4E2Q8NGC2 313 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 OR5W2Q8NH69 310 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 LCN9Q8WX39 176 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 UCN3Q969E3 161 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 LMAN2LQ9H0V9 348 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 MAB21L2Q9Y586 359 aa11.83□□□□□ -0.52
LIG1-221ENST00000613670 DUXAA6NLW8 204 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 OR52A4PA6NMU1 304 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 DPM1O60762 260 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 SLC43A1O75387 559 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 FGF18O76093 207 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 ADH1CP00326 375 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 SNRPBP14678 240 aaKnown RBP11.82□□□□□ -0.52
LIG1-221ENST00000613670 RAB3BP20337 219 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 BMP8BP34820 402 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 EVX1P49640 407 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 SIM1P81133 766 aaPredicted RBP11.82□□□□□ -0.52
LIG1-221ENST00000613670 TP53I3Q53FA7 332 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 ENTPD8Q5MY95 495 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 FIGNL1Q6PIW4 674 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 LYPD4Q6UWN0 246 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 BMP8AQ7Z5Y6 402 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 SLITRK4Q8IW52 837 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 OTUB2Q96DC9 234 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 DTD2Q96FN9 168 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 A4GALTQ9NPC4 353 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 BABAM2Q9NXR7 383 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 FKBP7Q9Y680 259 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 MYO16Q9Y6X6 1858 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 PLXNB2O15031 1838 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 IGLV3-16A0A075B6K0 115 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 ANTXRLA6NF34 631 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 A8MUA0 341 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 GTPBP1O00178 669 aaKnown RBP11.82□□□□□ -0.52
LIG1-221ENST00000613670 HRGP04196 525 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 HLA-DMAP28067 261 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 HMGA2P52926 109 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 GBX2P52951 348 aaPredicted RBP11.82□□□□□ -0.52
LIG1-221ENST00000613670 MVDP53602 400 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 ESCO2Q56NI9 601 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 ESPNLQ6ZVH7 1005 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 RDH10Q8IZV5 341 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 OR4D11Q8NGI4 311 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 OR8K3Q8NH51 312 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 ZFPM2Q8WW38 1151 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 ACOT12Q8WYK0 555 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 MED30Q96HR3 178 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 SGIP1Q9BQI5 828 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 TMEM43Q9BTV4 400 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 PHPT1Q9NRX4 125 aaPredicted RBP11.82□□□□□ -0.52
LIG1-221ENST00000613670 USP36Q9P275 1121 aaKnown RBP11.82□□□□□ -0.52
LIG1-221ENST00000613670 SLC23A1Q9UHI7 598 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 EXO1Q9UQ84 846 aaKnown RBP11.82□□□□□ -0.52
LIG1-221ENST00000613670 PAPPA2Q9BXP8 1791 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 A0A0G2JPF8 293 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 TRDV1A0A1B0GX56 115 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 HNRNPCL3B7ZW38 293 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 EMC8O43402 210 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 SCO2O43819 266 aa11.82□□□□□ -0.52
LIG1-221ENST00000613670 HNRNPCL4P0DMR1 293 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms