RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 CEACAM7Q14002 265 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 EBPQ15125 230 aaKnown RBP11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 ZNF630Q2M218 657 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 WDR53Q7Z5U6 358 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 NET1Q7Z628 596 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 CALHM3Q86XJ0 350 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 SLC44A2Q8IWA5 706 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 C9orf40Q8IXQ3 194 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 MICU2Q8IYU8 434 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 RBMXL3Q8N7X1 1067 aaKnown RBP11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 SLC16A11Q8NCK7 471 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 APCDD1LQ8NCL9 501 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 FAM156AQ8NDB6 213 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 OR5L2Q8NGL0 311 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 OR8K3Q8NH51 312 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 ADAMTS17Q8TE56 1095 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 CDS1Q92903 461 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 RAB8BQ92930 207 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 FER1L6-AS2Q96M78 137 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 VSTM2LQ96N03 204 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 ZNF583Q96ND8 569 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 BTBD9Q96Q07 612 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 WWTR1Q9GZV5 400 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 MUC13Q9H3R2 512 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 PIGUQ9H490 435 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 SERHL2Q9H4I8 314 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 MMP25Q9NPA2 562 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 A4GALTQ9NPC4 353 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 GIN1Q9NXP7 522 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 LIPT1Q9Y234 373 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 PCDHGB7Q9Y5F8 929 aa11.13□□□□□ -0.63
SHKBP1-213ENST00000597325 LRRTM2O43300 516 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 DPM1O60762 260 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 NME6O75414 186 aaPredicted RBP11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 TNFRSF21O75509 655 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 ZFAND5O76080 213 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 NKX2-2O95096 273 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 BCHEP06276 602 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 NQO1P15559 274 aaKnown RBP11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 HTR1EP28566 365 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 SOX11P35716 441 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 PPICP45877 212 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 MAN2A2P49641 1150 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 GPR143P51810 404 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 RRADP55042 308 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 CORO7P57737 925 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 RNF4P78317 190 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 CDK6Q00534 326 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 SCARB2Q14108 478 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 NNATQ16517 81 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 DUSP5Q16690 384 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 VMACQ2NL98 169 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 GPAT3Q53EU6 434 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 INTS11Q5TA45 600 aaKnown RBP11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 IRAK1BP1Q5VVH5 260 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 HPS6Q86YV9 775 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 KBTBD2Q8IY47 623 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 ZZZ3Q8IYH5 903 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 ZNF295-AS1Q8N0V1 137 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 C10orf111Q8N326 155 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 METTL25Q8N6Q8 603 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 CLEC1AQ8NC01 280 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 HIPK4Q8NE63 616 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 C17orf47Q8NEP4 570 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 NFKBIDQ8NI38 313 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 NUBPLQ8TB37 319 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 THAP4Q8WY91 577 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 MAL2Q969L2 176 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 LCORQ96JN0 433 aaPredicted RBP11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 IMMP1LQ96LU5 166 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 TMUB1Q9BVT8 246 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 BTBD2Q9BX70 525 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 DEFB126Q9BYW3 111 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 TRIM15Q9C019 465 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 TMEM38AQ9H6F2 299 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 CACYBPQ9HB71 228 aaKnown RBP11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 CALML5Q9NZT1 146 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 CD300AQ9UGN4 299 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 MAGEL2Q9UJ55 1249 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 MRTO4Q9UKD2 239 aaKnown RBP11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 DTX4Q9Y2E6 619 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 ZNF451Q9Y4E5 1061 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 SNX13Q9Y5W8 968 aa11.12□□□□□ -0.63
SHKBP1-213ENST00000597325 STAB1Q9NY15 2570 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 A8MVJ9 347 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 ACOX3O15254 700 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 CEACAM4O75871 244 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 NUDT7P0C024 238 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 ATP6V1C1P21283 382 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 DRD5P21918 477 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 TRHRP34981 398 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 KRT20P35900 424 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 GZMMP51124 257 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 CRISP3P54108 245 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 PER3P56645 1201 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 NRG3P56975 720 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 KRTAP10-9P60411 292 aa11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 AIMP2Q13155 320 aaKnown RBP11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 EXOSC6Q5RKV6 272 aaKnown RBP11.11□□□□□ -0.63
SHKBP1-213ENST00000597325 DCST2Q5T1A1 773 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms