RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 MSTNO14793 375 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 FADS1O60427 444 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 NME6O75414 186 aaPredicted RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 FCGR2AP12318 317 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 KRT4P19013 534 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 HK1P19367 917 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 TCEA1P23193 301 aaKnown RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 CPOXP36551 454 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 PCYT1AP49585 367 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 RPS3AP61247 264 aaKnown RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 STX5Q13190 355 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 GLYR1Q49A26 553 aaPredicted RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 RNF165Q6ZSG1 346 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 UBQLNLQ8IYU4 475 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 CEP70Q8NHQ1 597 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 LINC01560Q8TB33 94 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 SMPDL3BQ92485 455 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 GFM2Q969S9 779 aaKnown RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 TRIM44Q96DX7 344 aaPredicted RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 ZBED6CLQ96FA7 236 aaPredicted RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 LMF2Q9BU23 707 aaKnown RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 G6PC3Q9BUM1 346 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 TMUB1Q9BVT8 246 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 LRTM1Q9HBL6 345 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 EIF3LQ9Y262 564 aaKnown RBP11.87□□□□□ -0.51
RTN3-212ENST00000543123 TMED5Q9Y3A6 229 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 ZNF175Q9Y473 711 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 VPS13CQ709C8 3753 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 MED12Q93074 2177 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 ZNF469Q96JG9 3925 aaPredicted RBP11.86□□□□□ -0.51
RTN3-212ENST00000543123 A8MXE2 369 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 AZIN1O14977 448 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 TNFRSF21O75509 655 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 SMNDC1O75940 238 aaKnown RBP eCLIP11.86□□□□□ -0.51
RTN3-212ENST00000543123 PRPS2P11908 318 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 RFX3P48380 749 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 B3GALT5-AS1P59052 145 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 OCRLQ01968 901 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 C17orf67Q0P5P2 114 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 HSPB3Q12988 150 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 SH2D5Q6ZV89 423 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 GSPT2Q8IYD1 628 aaKnown RBP11.86□□□□□ -0.51
RTN3-212ENST00000543123 CNEP1R1Q8N9A8 125 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 CDRT4Q8N9R6 151 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 PPCDCQ96CD2 204 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 C1GALT1C1Q96EU7 318 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 SLC39A3Q9BRY0 314 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 LIME1Q9H400 295 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 REEP4Q9H6H4 257 aa11.86□□□□□ -0.51
RTN3-212ENST00000543123 UQCRHLA0A096LP55 91 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 TBX19O60806 448 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 TNFSF13O75888 250 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 UTS2O95399 124 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 TGM6O95932 706 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 SHBGP04278 402 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 KLK2P20151 261 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 GABRA3P34903 492 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 ASMTP46597 345 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 MANFP55145 182 aaKnown RBP11.85□□□□□ -0.51
RTN3-212ENST00000543123 PRR5P85299 388 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 CLEC6AQ6EIG7 209 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 SZRD1Q7Z422 152 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 R3HCC1LQ7Z5L2 792 aaKnown RBP11.85□□□□□ -0.51
RTN3-212ENST00000543123 GPR151Q8TDV0 419 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 DUSP19Q8WTR2 217 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 MTERF3Q96E29 417 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 MS4A4EQ96PG1 132 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 EML4Q9HC35 981 aaKnown RBP11.85□□□□□ -0.51
RTN3-212ENST00000543123 EQTNQ9NQ60 294 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 ACSS1Q9NUB1 689 aaPredicted RBP11.85□□□□□ -0.51
RTN3-212ENST00000543123 MKS1Q9NXB0 559 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 PAQR5Q9NXK6 330 aaPredicted RBP11.85□□□□□ -0.51
RTN3-212ENST00000543123 ZNF226Q9NYT6 803 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 MED11Q9P086 117 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 CCL27Q9Y4X3 112 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 AP4B1Q9Y6B7 739 aa11.85□□□□□ -0.51
RTN3-212ENST00000543123 NIPBLQ6KC79 2804 aaeCLIP11.84□□□□□ -0.51
RTN3-212ENST00000543123 MPDZO75970 2070 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 A0A087WZY1 265 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 IGLV3-32A0A0A0MS00 114 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 OR2M5A3KFT3 312 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 TMEM114B3SHH9 223 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 H3BML4 177 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 SEC14L5O43304 696 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 TRIM13O60858 407 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 ATE1O95260 518 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 HSPA4LO95757 839 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 ANGPTL1O95841 491 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 HRGP04196 525 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 NGFRP08138 427 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 HPGDP15428 266 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 ZNF17P17021 662 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 MAPK1P28482 360 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 LCN1P31025 176 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 HPCAL1P37235 193 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 RPL3P39023 403 aaKnown RBP11.84□□□□□ -0.51
RTN3-212ENST00000543123 RPL38P63173 70 aaKnown RBP11.84□□□□□ -0.51
RTN3-212ENST00000543123 KIAA0040Q15053 153 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 PRSS53Q2L4Q9 553 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms