RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 IFRD1O00458 451 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 CASKO14936 926 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 MID1O15344 667 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 GPR37L1O60883 481 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 CBR3O75828 277 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 YIF1AO95070 293 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 HIST1H2ABP04908 130 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 OR4E1P0C645 316 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PRR23D2P0DMB1 279 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 SLC2A1P11166 492 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 MPGP29372 298 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 ATP6V1E1P36543 226 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 SLC1A2P43004 574 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 CLDN8P56748 225 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 CDK6Q00534 326 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PURAQ00577 322 aaKnown RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 NRG1Q02297 640 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 RBM39Q14498 530 aaKnown RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 NDUFAF6Q330K2 333 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 GFOD2Q3B7J2 385 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 DUSP28Q4G0W2 176 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 XKR7Q5GH72 579 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 SDHAF4Q5VUM1 108 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 HIST3H2AQ7L7L0 130 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 CNTN4Q8IWV2 1026 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PTGR2Q8N8N7 351 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PPHLN1Q8NEY8 458 aaKnown RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 OR1S2Q8NGQ3 325 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 HUS1BQ8NHY5 278 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 SPPL3Q8TCT6 385 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 HIST1H2ACQ93077 130 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 FEVQ99581 238 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 TMEM208Q9BTX3 173 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PBX4Q9BYU1 374 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 FXYD6Q9H0Q3 95 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 BCO1Q9HAY6 547 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 SLC22A14Q9Y267 594 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 TMEM210A6NLX4 147 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 OR6C76A6NM76 312 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 FAM220BPB1ANY3 271 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 BLOC1S5-TXNDC5H3BN57 136 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PRKYO43930 277 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 MFSD11O43934 449 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PIP5K1CO60331 668 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PMP2P02689 132 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 ANXA2P07355 339 aaKnown RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 LINC00614P0C842 121 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 CYBAP13498 195 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 TBXA2RP21731 343 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 XPAP23025 273 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 AKAP5P24588 427 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 RPS25P62851 125 aaKnown RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 NFKB2Q00653 900 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 ARHGAP1Q07960 439 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 BIKQ13323 160 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 RSU1Q15404 277 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 FAM69AQ5T7M9 428 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 FAM102BQ5T8I3 360 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 ARMC6Q6NXE6 501 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 NHLRC1Q6VVB1 395 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 TRMT1LQ7Z2T5 733 aaKnown RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 LRRC28Q86X40 367 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 TRAM1L1Q8N609 369 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 UBAC2Q8NBM4 344 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 OR6K3Q8NGY3 331 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 GNPDA2Q8TDQ7 276 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 MAFIPQ8WZ33 124 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 C3orf49Q96BT1 292 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 FAM122AQ96E09 287 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF354BQ96LW1 612 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 SPATA33Q96N06 139 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 CLCC1Q96S66 551 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 NKIRAS2Q9NYR9 191 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 UBQLN1Q9UMX0 589 aaKnown RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 H0YCG3 227 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 H7C1Q1 480 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 MDM4O15151 490 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 FADS1O60427 444 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 DIRAS3O95661 229 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 SEMG1P04279 462 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 THP07101 528 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 PIPP12273 146 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-214ENST00000540539 BDKRB2P30411 391 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 SLC6A4P31645 630 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 GALNSP34059 522 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 THBS2P35442 1172 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 HCCSP53701 268 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 PNLIPRP2P54317 469 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 SLC39A12Q504Y0 691 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 C6orf136Q5SQH8 315 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF549Q6P9A3 640 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 DEGS2Q6QHC5 323 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 ABHD15Q6UXT9 468 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 QSOX2Q6ZRP7 698 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 PID1Q7Z2X4 250 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 SIAH3Q8IW03 269 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 RTL3Q8N8U3 475 aaKnown RBP8.88□□□□□ -0.99
CLIP1-214ENST00000540539 OR6J1Q8NGC5 347 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 ST7LQ8TDW4 575 aa8.88□□□□□ -0.99
CLIP1-214ENST00000540539 PXYLP1Q8TE99 480 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms