RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 VSTM2LQ96N03 204 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 THUMPD2Q9BTF0 503 aaKnown RBP2.09□□□□□ -2.07
CD44-238ENST00000534296 SLITRK2Q9H156 845 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 RIBC2Q9H4K1 309 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 ASB8Q9H765 288 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 WDR76Q9H967 626 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 ISG20L2Q9H9L3 353 aaKnown RBP2.09□□□□□ -2.07
CD44-238ENST00000534296 ADAM22Q9P0K1 906 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 MLXQ9UH92 298 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 RNF115Q9Y4L5 304 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 NPC1L1Q9UHC9 1359 aa2.09□□□□□ -2.08
CD44-238ENST00000534296 POGZQ7Z3K3 1410 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 IGKV6D-21A0A0A0MT36 114 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 FAM168BA1KXE4 195 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 GSAPA4D1B5 854 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 CCT8L1PA6NM43 557 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 A8MX80 341 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 PDLIM1O00151 329 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 TRIM3O75382 744 aaPredicted RBP2.08□□□□□ -2.08
CD44-238ENST00000534296 SEMA4FO95754 770 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 PGK1P00558 417 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 AK1P00568 194 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 HOXB7P09629 217 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 ATP5A1P25705 553 aaKnown RBP2.08□□□□□ -2.08
CD44-238ENST00000534296 RPA1P27694 616 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 XCR1P46094 333 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 SLC26A2P50443 739 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 HAND2P61296 217 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 IGLV3-21P80748 117 aaPredicted RBP2.08□□□□□ -2.08
CD44-238ENST00000534296 HTD2P86397 168 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 PLOD1Q02809 727 aaPredicted RBP2.08□□□□□ -2.08
CD44-238ENST00000534296 PDZK1IP1Q13113 114 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 IL18R1Q13478 541 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 TRIP10Q15642 601 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 LTB4RQ15722 352 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 QRICH1Q2TAL8 776 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 ZNF699Q32M78 642 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 LRIT3Q3SXY7 679 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 TEX44Q53QW1 395 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 DCST2Q5T1A1 773 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 UTF1Q5T230 341 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 METTL11BQ5VVY1 283 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 PNCKQ6P2M8 343 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 BTNL3Q6UXE8 466 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 ZNF562Q6V9R5 426 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 ZNF600Q6ZNG1 722 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 VASH2Q86V25 355 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 IFNEQ86WN2 208 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 HSCBQ8IWL3 235 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 Q8N9G6 341 aaPredicted RBP2.08□□□□□ -2.08
CD44-238ENST00000534296 OR52B4Q8NGK2 314 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 UPRTQ96BW1 309 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 TPPP3Q9BW30 176 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 TBC1D10AQ9BXI6 508 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 DHRS4-AS1Q9P1J3 65 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 ATXN10Q9UBB4 475 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 EXOSC1Q9Y3B2 195 aaKnown RBP2.08□□□□□ -2.08
CD44-238ENST00000534296 AP4B1Q9Y6B7 739 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 KIF25-AS1Q9Y6Z4 181 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 ADAMTS9Q9P2N4 1935 aa2.08□□□□□ -2.08
CD44-238ENST00000534296 GON4LQ3T8J9 2241 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 SMIM28A0A1B0GU29 152 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 FBLL1A6NHQ2 334 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 LRRC30A6NM36 301 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 H0YL77 283 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 CLDN5O00501 218 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 NDC80O14777 642 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 TNFSF11O14788 317 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 JAK2O60674 1132 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 TPST2O60704 377 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 N4BP1O75113 896 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 GJB5O95377 273 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 PTBP3O95758 552 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 IFNB1P01574 187 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 EPB41P11171 864 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 BCKDHAP12694 445 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 NCF1P14598 390 aaPredicted RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 CYP11B1P15538 503 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 IDSP22304 550 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 GDF1P27539 372 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 PTPN4P29074 926 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 MAT2AP31153 395 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 PRPHP41219 470 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 PTGFRP43088 359 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 RGRP47804 291 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 GPC3P51654 580 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 ZNF85Q03923 595 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 RGS1Q08116 209 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 ZKSCAN8Q15776 578 aaPredicted RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 MAPK6Q16659 721 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 CYP51A1Q16850 503 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 ZNF528Q3MIS6 628 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 DCAF4L1Q3SXM0 396 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 TMEM41BQ5BJD5 291 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 LCE3EQ5T5B0 92 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 LEG1Q6P5S2 330 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 ZCCHC12Q6PEW1 402 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 SYT10Q6XYQ8 523 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 ADAMTSL5Q6ZMM2 481 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 GET4Q7L5D6 327 aaPredicted RBP2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms