RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 KCNK2O95069 426 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 UTS2O95399 124 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 C6orf47O95873 294 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 CHEK2O96017 543 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 ALDOCP09972 364 aaKnown RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 PRPS2P11908 318 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 TCEA1P23193 301 aaKnown RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 MSX1P28360 303 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 ASMTP46597 345 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 MANFP55145 182 aaKnown RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 TPD52P55327 224 aaPredicted RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 EMX2Q04743 252 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 SNTB1Q13884 538 aaKnown RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 EFR3AQ14156 821 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 TMEM44Q2T9K0 475 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 CCNJQ5T5M9 372 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 RIPPLY2Q5TAB7 128 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 ACAD11Q709F0 780 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 MAVSQ7Z434 540 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 CAMKMTQ7Z624 323 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 LURAP1LQ8IV03 231 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 CLECL1Q8IZS7 167 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 CLEC4FQ8N1N0 589 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 C9orf106Q8NAJ2 232 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 FNDC5Q8NAU1 212 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 OR5M1Q8NGP8 315 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 CA5BP1Q8WTZ4 195 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 ABTB1Q969K4 478 aaPredicted RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 TUBGCP3Q96CW5 907 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 TMCO6Q96DC7 493 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 RMND5BQ96G75 393 aaPredicted RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 TEX37Q96LM6 180 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 TUBA1CQ9BQE3 449 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 CENPHQ9H3R5 247 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 DSN1Q9H410 356 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 EXO5Q9H790 373 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 CHST11Q9NPF2 352 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 B4GALT7Q9UBV7 327 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 MRPS18CQ9Y3D5 142 aaKnown RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 RAP2CQ9Y3L5 183 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 OR10H1Q9Y4A9 318 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 PRR14LQ5THK1 2151 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ABCA4P78363 2273 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 MBD3L4A6NDZ8 208 aaPredicted RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 MBD3L3A6NE82 208 aaPredicted RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 MBD3L5A6NJ08 208 aaPredicted RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 AHRRA9YTQ3 701 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 SHISA8B8ZZ34 492 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ZNF195O14628 629 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 EMC8O43402 210 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ZWINTO95229 277 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 HSPA4LO95757 839 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 HMGN2P05204 90 aaKnown RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 CPN1P15169 458 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 IL12AP29459 219 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 IL12BP29460 328 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 SRD5A2P31213 254 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ZFP36L2P47974 494 aaKnown RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 RPL14P50914 215 aaKnown RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 PRKAG1P54619 331 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 CLDN8P56748 225 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 MAGOHP61326 146 aaKnown RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 HBA1P69905 142 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 RPP38P78345 283 aaKnown RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 FOXF2Q12947 444 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ATP6AP1LQ52LC2 224 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 NSUN5P2Q63ZY6 315 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 FIGNL1Q6PIW4 674 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 OLIG3Q7RTU3 272 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 DMRTC2Q8IXT2 367 aaPredicted RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 ANKRD42Q8N9B4 389 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 MBD3L2Q8NHZ7 208 aaPredicted RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 DUSP19Q8WTR2 217 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ASB5Q8WWX0 329 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ZBED6CLQ96FA7 236 aaPredicted RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 MS4A4EQ96PG1 132 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 SH3GL2Q99962 352 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 NUF2Q9BZD4 464 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 MEAF6Q9HAF1 191 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 Q9N2J8 555 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 KCNK9Q9NPC2 374 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 FAM120CQ9NX05 1096 aaKnown RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 TAS2R10Q9NYW0 307 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 COQ3Q9NZJ6 369 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 CLCF1Q9UBD9 225 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ABCG2Q9UNQ0 655 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 CAMK2AQ9UQM7 478 aa9.65□□□□□ -0.86
CD44-227ENST00000528086 ANKHD1Q8IWZ3 2542 aaKnown RBP9.65□□□□□ -0.86
CD44-227ENST00000528086 CCDC168Q8NDH2 2452 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 NPIPA5A0A0B4J1W7 369 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 CENPVL1A0A0U1RR11 272 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 A0A1W2PRB8 838 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 PRAMEF27A3QJZ7 478 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 CD8B2A6NJW9 211 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 C9JVG2 144 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 NPIPA7E9PJI5 369 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 NPIPB9F8W1W9 429 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 OXSR1O95747 527 aaPredicted RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 TGM6O95932 706 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms