RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CARMIL1Q5VZK9 1371 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 MAGI1Q96QZ7 1491 aaPredicted RBP3.45□□□□□ -1.86
CD44-223ENST00000526553 ERCC6L2Q5T890 1561 aa3.45□□□□□ -1.86
CD44-223ENST00000526553 SF3B1O75533 1304 aaKnown RBP eCLIP3.44□□□□□ -1.86
CD44-223ENST00000526553 KIF16BQ96L93 1317 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 GRIN2BQ13224 1484 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 A0A0A6YYD4 124 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 FBLL1A6NHQ2 334 aaKnown RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 NPIPA2E9PIF3 369 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 CYB561D2O14569 222 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 EI24O14681 340 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 SDC3O75056 442 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 SPAG6O75602 509 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 ANP32DO95626 131 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 ECDO95905 644 aaPredicted RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 OPN1MWP04001 364 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 FCGR3AP08637 254 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 ANXA4P09525 319 aaPredicted RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 OPN1MW2P0DN77 364 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 OPN1MW3P0DN78 364 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 UMPSP11172 480 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 UQCRBP14927 111 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 PSMA2P25787 234 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 TRIM23P36406 574 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 ACADVLP49748 655 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 GBX2P52951 348 aaPredicted RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 NOP14P78316 857 aaKnown RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 GSTO1P78417 241 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 MRPS6P82932 125 aaKnown RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 SNTB2Q13425 540 aaKnown RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 EMC2Q15006 297 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 LTB4RQ15722 352 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 ZNF699Q32M78 642 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 SLC22A6Q4U2R8 563 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 CFAP157Q5JU67 520 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 NCR3LG1Q68D85 454 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 SULT1C3Q6IMI6 304 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 LEG1Q6P5S2 330 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 CASC1Q6TDU7 716 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 CBLN3Q6UW01 205 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 PAMR1Q6UXH9 720 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 ZDHHC21Q8IVQ6 265 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 CENPSQ8N2Z9 138 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 ARFGAP2Q8N6H7 521 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 CHDHQ8NE62 594 aaPredicted RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 OR2T34Q8NGX1 318 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 RLN3Q8WXF3 142 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 N4BP2L2Q92802 583 aaPredicted RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 TBCDQ9BTW9 1192 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 RAB33BQ9H082 229 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 KAT8Q9H7Z6 458 aaKnown RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 PALMDQ9NP74 551 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 ABCC13Q9NSE7 274 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 KLRF1Q9NZS2 232 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 C6orf203Q9P0P8 240 aaPredicted RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 COX16Q9P0S2 106 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 PURGQ9UJV8 347 aaKnown RBP3.44□□□□□ -1.86
CD44-223ENST00000526553 B9D1Q9UPM9 204 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 DHRS7Q9Y394 339 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 KDM6BO15054 1643 aa3.44□□□□□ -1.86
CD44-223ENST00000526553 PARD3Q8TEW0 1356 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 TTC26A0AVF1 554 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 WASHC1A8K0Z3 465 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 A8MUI8 341 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 CLDN5O00501 218 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 ALOX15BO15296 676 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 LRRTM2O43300 516 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 PALMO75781 387 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 IGHG3P01860 377 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 CSF2P04141 144 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 CALML3P27482 149 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 PPP2R1BP30154 601 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 HMGN5P82970 282 aaKnown RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 SPIBQ01892 262 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 ZP4Q12836 540 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 BNIP1Q12981 228 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 EXOSC2Q13868 293 aaKnown RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 CRMP1Q14194 572 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 RFTN1Q14699 578 aaPredicted RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 ABRAXAS2Q15018 415 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 TRIP10Q15642 601 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 TCHHL1Q5QJ38 904 aaPredicted RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 MARC1Q5VT66 337 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 DMKNQ6E0U4 476 aaPredicted RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 ATRAIDQ6UW56 229 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 LPCAT2Q7L5N7 544 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 LHFPL4Q7Z7J7 247 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 LUZP1Q86V48 1076 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 C11orf42Q8N5U0 333 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 NFAM1Q8NET5 270 aaPredicted RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 OR4F5Q8NH21 305 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 ZBED6CLQ96FA7 236 aaPredicted RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 HPDLQ96IR7 371 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 MCCC1Q96RQ3 725 aaPredicted RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 ALG9Q9H6U8 611 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.43□□□□□ -1.86
CD44-223ENST00000526553 SENP1Q9P0U3 644 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 EIF3KQ9UBQ5 218 aaKnown RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 EMCNQ9ULC0 261 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 MAB21L2Q9Y586 359 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms