RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 AADACL4Q5VUY2 407 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 ABI3BPQ7Z7G0 1075 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 NRROSQ86YC3 692 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 ZNF513Q8N8E2 541 aaPredicted RBP16.77■□□□□ 0.28
VIM-206ENST00000487938 GDPD1Q8N9F7 314 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 SRFBP1Q8NEF9 429 aaKnown RBP16.77■□□□□ 0.28
VIM-206ENST00000487938 ZFPM2Q8WW38 1151 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 ACOT11Q8WXI4 607 aaPredicted RBP16.77■□□□□ 0.28
VIM-206ENST00000487938 OSTF1Q92882 214 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 ISYNA1Q9NPH2 558 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 NDRG2Q9UN36 371 aaKnown RBP16.77■□□□□ 0.28
VIM-206ENST00000487938 C2orf16Q68DN1 1984 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 C2orf92A0A1B0GVN3 265 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 GRXCR1A8MXD5 290 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 SOCS6O14544 535 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 CDC42EP2O14613 210 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 PLA2G10O15496 165 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 HPGDSO60760 199 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 STAT5AP42229 794 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 STXBP1P61764 594 aaKnown RBP16.77■□□□□ 0.27
VIM-206ENST00000487938 DECR1Q16698 335 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 GALNT12Q8IXK2 581 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 POGLUT1Q8NBL1 392 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 SPRYD4Q8WW59 207 aaPredicted RBP16.77■□□□□ 0.27
VIM-206ENST00000487938 TP53INP1Q96A56 240 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 SAMD8Q96LT4 415 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 APOOQ9BUR5 198 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 IL20Q9NYY1 176 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 CALML5Q9NZT1 146 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 SLC7A7Q9UM01 511 aa16.77■□□□□ 0.27
VIM-206ENST00000487938 CENPVL1A0A0U1RR11 272 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 SHISA3A0PJX4 238 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 CD8B2A6NJW9 211 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 ADH1BP00325 375 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 CD8BP10966 210 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 FUT1P19526 365 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 PRKAR1BP31321 381 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 RPS21P63220 83 aaKnown RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.76■□□□□ 0.272e-13■□□□□ 9.3
VIM-206ENST00000487938 PUS10Q3MIT2 529 aaKnown RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 ZFP69Q49AA0 526 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 CCNJQ5T5M9 372 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 ZNF425Q6IV72 752 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 FRRS1Q6ZNA5 592 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 VN1R4Q7Z5H5 301 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 MARCH9Q86YJ5 346 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 NLGN4YQ8NFZ3 816 aaPredicted RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 LCN9Q8WX39 176 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 NACC2Q96BF6 587 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 SECISBP2Q96T21 854 aaKnown RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 C1QTNF2Q9BXJ5 285 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 PRRG3Q9BZD7 231 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 NUFIP1Q9UHK0 495 aaKnown RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 BOLA1Q9Y3E2 137 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 TRDV1A0A1B0GX56 115 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 PRR19A6NJB7 356 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 FPR3P25089 353 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 FGF9P31371 208 aaPredicted RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 KIR2DL3P43628 341 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 P2RY14Q15391 338 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 CEBPEQ15744 281 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 FAM214AQ32MH5 1076 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 SLC35F1Q5T1Q4 408 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 CNIH2Q6PI25 160 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 RD3Q7Z3Z2 195 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 CPOQ8IVL8 374 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 SHISA5Q8N114 240 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 ZCCHC10Q8TBK6 192 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 AP3S1Q92572 193 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 RFKQ969G6 155 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 C10orf90Q96M02 699 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 ZNF649Q9BS31 505 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 BEX2Q9BXY8 128 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 MKRN2Q9H000 416 aaKnown RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 FGF22Q9HCT0 170 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 H2AFY2Q9P0M6 372 aaPredicted RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 CBLCQ9ULV8 474 aa16.76■□□□□ 0.27
VIM-206ENST00000487938 ZNF443Q9Y2A4 671 aaPredicted RBP16.76■□□□□ 0.27
VIM-206ENST00000487938 ZC3H12DA2A288 527 aaKnown RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 HMX3A6NHT5 357 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 B4DXG7 233 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 GABRPO00591 440 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 DVL2O14641 736 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 AK4P27144 223 aaPredicted RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 SIM1P81133 766 aaPredicted RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 GPM6BQ13491 265 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 DSG2Q14126 1118 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 GPR68Q15743 365 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 PGGHGQ32M88 737 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 MFSD12Q6NUT3 480 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 CD200R1LQ6Q8B3 271 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 MBOAT2Q6ZWT7 520 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 GLCCI1Q86VQ1 547 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 AMIGO1Q86WK6 493 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 KLBQ86Z14 1044 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TRIM48Q8IWZ4 208 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 GJD3Q8N144 294 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 NR4A3Q92570 626 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 ART5Q96L15 291 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 SARGQ9BW04 601 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms