RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ATAD3BQ5T9A4 648 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 C1orf146Q5VVC0 180 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 TCEAL6Q6IPX3 200 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 DHRS4L2Q6PKH6 230 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 IZUMO2Q6UXV1 221 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 DHDDSQ86SQ9 333 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 SLC47A2Q86VL8 602 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 ECHDC2Q86YB7 292 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 TBC1D10CQ8IV04 446 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 ZC3H3Q8IXZ2 948 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 PEX5LQ8IYB4 626 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 KIF2BQ8N4N8 673 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 TRIML2Q8N7C3 387 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 POM121L12Q8N7R1 296 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 FAM133AQ8N9E0 248 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 CORO2AQ92828 525 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 POP5Q969H6 163 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 C11orf52Q96A22 123 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 BSCL2Q96G97 398 aaPredicted RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 PCDHB18PQ96TA0 734 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 SH3GL1Q99961 368 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 CNPY3Q9BT09 278 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 YTHDF1Q9BYJ9 559 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 FNDC4Q9H6D8 234 aaPredicted RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 DHX33Q9H6R0 707 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 MRPL47Q9HD33 250 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 TMEM9Q9P0T7 183 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 GNPTGQ9UJJ9 305 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.78□□□□□ -1.64
USP40-213ENST00000483216 CHMP2BQ9UQN3 213 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 NCKAP1Q9Y2A7 1128 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 FAM205AQ6ZU69 1335 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 ILVBLA1L0T0 632 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 TRIM49BA6NDI0 452 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 SIGLEC16A6NMB1 481 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 TCP10L2B9ZVM9 353 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 TNFSF12O43508 249 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 BAG2O95816 211 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 MCF2P10911 925 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 ETV5P41161 510 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 OR3A1P47881 315 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 CDK9P50750 372 aaKnown RBP4.77□□□□□ -1.65
USP40-213ENST00000483216 NLRP11P59045 1033 aaKnown RBP4.77□□□□□ -1.65
USP40-213ENST00000483216 SCN1BQ07699 218 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 CD300CQ08708 224 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 DNAJC3Q13217 504 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 DPYSQ14117 519 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 MORF4L2Q15014 288 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 PDK3Q15120 406 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 CAVIN4Q5BKX8 364 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 METTL21CQ5VZV1 264 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 NIPAL1Q6NVV3 410 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 Q6ZVQ6 151 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 ARCQ7LC44 396 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 ANKRD46Q86W74 232 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 ZNF677Q86XU0 584 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 SLC13A5Q86YT5 568 aaPredicted RBP4.77□□□□□ -1.65
USP40-213ENST00000483216 CRLF3Q8IUI8 442 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 SPEM1Q8N4L4 309 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 TMCO5AQ8N6Q1 288 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.77□□□□□ -1.65
USP40-213ENST00000483216 FAM172AQ8WUF8 416 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 S100ZQ8WXG8 99 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 PRCCQ92733 491 aaPredicted RBP4.77□□□□□ -1.65
USP40-213ENST00000483216 TOP1MTQ969P6 601 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 TSSK1BQ9BXA7 367 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 DPEP2Q9H4A9 486 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 TRABDQ9H4I3 376 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 HEXA-AS1Q9H8Q6 139 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 RAB9BQ9NP90 201 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 EURLQ9NYK6 297 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 GTSE1Q9NYZ3 720 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 PILRAQ9UKJ1 303 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 PRPF19Q9UMS4 504 aaKnown RBP4.77□□□□□ -1.65
USP40-213ENST00000483216 SNX24Q9Y343 169 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 PCDHGA1Q9Y5H4 931 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 POMT1Q9Y6A1 747 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 MAD1L1Q9Y6D9 718 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 COL24A1Q17RW2 1714 aa4.77□□□□□ -1.65
USP40-213ENST00000483216 ECM29Q5VYK3 1845 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 MYO3BQ8WXR4 1341 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 A0A087WXM4 84 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 A0A0J9YVX5 310 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 ACOD1A6NK06 481 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 YDJCA8MPS7 323 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 SLC22A1O15245 554 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 MLNRO43193 412 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 SCO2O43819 266 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 ENTPD5O75356 428 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 KRT75O95678 551 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 MT-ND3P03897 115 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 RLN1P04808 185 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 SERPINA6P08185 405 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 PLEKP08567 350 aaPredicted RBP4.76□□□□□ -1.65
USP40-213ENST00000483216 OCM2P0CE71 109 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 OCMP0CE72 109 aaPredicted RBP4.76□□□□□ -1.65
USP40-213ENST00000483216 GFAPP14136 432 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 SOAT1P35610 550 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 ABCE1P61221 599 aaKnown RBP4.76□□□□□ -1.65
USP40-213ENST00000483216 BTG1P62324 171 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms