RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 NTN3O00634 580 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 DSCR3O14972 297 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 CDC123O75794 336 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 NADKO95544 446 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ECDO95905 644 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ZNF182P17025 639 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ACP1P24666 158 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 GCGRP47871 477 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR1D4P47884 311 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 RP1P56715 2156 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 HSD17B7P56937 341 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 EEF1A2Q05639 463 aaKnown RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 DSG2Q14126 1118 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 TBRG1Q3YBR2 411 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 REEP3Q6NUK4 255 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 EIF3MQ7L2H7 374 aaKnown RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 GALNT10Q86SR1 603 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SLITRK4Q8IW52 837 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SLC44A2Q8IWA5 706 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR7G2Q8NG99 324 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 XAGE5Q8WWM1 108 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ATOH1Q92858 354 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SLC47A1Q96FL8 570 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 DEPDC7Q96QD5 511 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR6C1Q96RD1 312 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 GHITMQ9H3K2 345 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 MAGIXQ9H6Y5 334 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ACOXLQ9NUZ1 547 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ADPRHL2Q9NX46 363 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 EMC3Q9P0I2 261 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 NTMQ9P121 344 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 KIF17Q9P2E2 1029 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ENOPH1Q9UHY7 261 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 RARRES3Q9UL19 164 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ZNF451Q9Y4E5 1061 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 CACNA1HO95180 2353 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 UNC13CQ8NB66 2214 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SCN3AQ9NY46 2000 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 UPK1AO00322 258 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR7A10O76100 309 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 BCL10O95999 233 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 LDLRP01130 860 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 IFNA14P01570 189 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 MT-ND1P03886 318 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 BCHEP06276 602 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ATXN8OSP0DMR3 200 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR12D1P0DN82 309 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SSTP61278 116 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 PMS2P3Q13401 168 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 TRA2AQ13595 282 aaKnown RBP eCLIP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ERV3-1Q14264 604 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ZNF628Q5EBL2 1059 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 CBLL1Q75N03 491 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR2L13Q8N349 312 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 PARP8Q8N3A8 854 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SLC38A5Q8WUX1 472 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 RBM18Q96H35 190 aaKnown RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 MS4A4EQ96PG1 132 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SEMA6AQ9H2E6 1030 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ANKRA2Q9H9E1 313 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 EQTNQ9NQ60 294 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 FBXO8Q9NRD0 319 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 AGPAT4Q9NRZ5 378 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 PAQR5Q9NXK6 330 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 P2RX2Q9UBL9 471 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 VPS13AQ96RL7 3174 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ADAMTS9Q9P2N4 1935 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 A0A087WV62 115 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 A0A1W2PQ72 361 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 C7orf72A4D263 438 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 C12orf71A8MTZ7 269 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 AGRPO00253 132 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 CDX4O14627 284 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SUV39H1O43463 412 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 DEAF1O75398 565 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 IFI6P09912 130 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 FBLP22087 321 aaKnown RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 MAPK10P53779 464 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 IKZF1Q13422 519 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 FAM111BQ6SJ93 734 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 SUMF1Q8NBK3 374 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR5D16Q8NGK9 328 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR13F1Q8NGS4 319 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ENKURQ8TC29 256 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ZNF675Q8TD23 568 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 PIK3R3Q92569 461 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 CENPNQ96H22 339 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 RNF170Q96K19 258 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 OR1F2PQ96R84 312 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 YIPF4Q9BSR8 244 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 EDEM2Q9BV94 578 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 ACTRT3Q9BYD9 372 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 C19orf53Q9UNZ5 99 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-201ENST00000442201 TMEM5Q9Y2B1 443 aa7.54□□□□□ -1.2
CCDC39-201ENST00000442201 FAM149AA5PLN7 773 aa7.53□□□□□ -1.2
CCDC39-201ENST00000442201 DUXAA6NLW8 204 aa7.53□□□□□ -1.2
CCDC39-201ENST00000442201 CTDSP2O14595 271 aa7.53□□□□□ -1.2
CCDC39-201ENST00000442201 ST8SIA5O15466 376 aa7.53□□□□□ -1.2
CCDC39-201ENST00000442201 SLC28A2O43868 658 aa7.53□□□□□ -1.2
CCDC39-201ENST00000442201 PLOD3O60568 738 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms