RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ZNF619Q8N2I2 560 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 OR4K3Q96R72 315 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 CLSTN3Q9BQT9 956 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 HIF3AQ9Y2N7 669 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 PTRH2Q9Y3E5 179 aaKnown RBP16.23■□□□□ 0.19
PTPRF-209ENST00000438120 A0A0J9YY10 115 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 DCDC2BA2VCK2 349 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 AMY2AP04746 511 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 TMEM31Q5JXX7 168 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 BEST3Q8N1M1 668 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 VWA5B2Q8N398 1253 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 CRYGNQ8WXF5 182 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 SGCZQ96LD1 299 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 SFXN2Q96NB2 322 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 HOXD1Q9GZZ0 328 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 ADAMTS5Q9UNA0 930 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 TRAV18A0A075B6X5 111 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 NOTOA8MTQ0 251 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 C12orf71A8MTZ7 269 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 CAPNS1P04632 268 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 HMGN2P05204 90 aaKnown RBP16.22■□□□□ 0.19
PTPRF-209ENST00000438120 OR7A5Q15622 319 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 CCNJQ5T5M9 372 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 PNCKQ6P2M8 343 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 OR6C4Q8NGE1 309 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 ACPTQ9BZG2 426 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 ARL6Q9H0F7 186 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 HEBP1Q9NRV9 189 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 VAPAQ9P0L0 249 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 IFNA5P01569 189 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 PNMTP11086 282 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 FOLR3P41439 243 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 GSCP56915 257 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-209ENST00000438120 NLKQ9UBE8 527 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 SH3BGRL2Q9UJC5 107 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 FXYD4P59646 89 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 PTPRRQ15256 657 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 CCBE1Q6UXH8 406 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-209ENST00000438120 ARHGAP12Q8IWW6 846 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 OR5T1Q8NG75 326 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 OR52R1Q8NGF1 315 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 DPCDQ9BVM2 203 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-209ENST00000438120 MYH11P35749 1972 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 FUT1P19526 365 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 CDKN3Q16667 212 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 LCTLQ6UWM7 567 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 TSPYL5Q86VY4 417 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-209ENST00000438120 CDRT4Q8N9R6 151 aa16.22■□□□□ 0.19
PTPRF-209ENST00000438120 MAELQ96JY0 434 aaKnown RBP16.22■□□□□ 0.19
PTPRF-209ENST00000438120 GABRR3A8MPY1 467 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 PBX2P40425 430 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 EMP2P54851 167 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 ACY1Q03154 408 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 TMEM205Q6UW68 189 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 GPR150Q8NGU9 434 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 NXF5Q9H1B4 397 aaKnown RBP16.21■□□□□ 0.19
PTPRF-209ENST00000438120 SDR39U1Q9NRG7 319 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-209ENST00000438120 SLC39A1Q9NY26 324 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 ACAD8Q9UKU7 415 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 FTCDNL1E5RQL4 147 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 NDUFB2O95178 105 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 C7P10643 843 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 RNASE10Q5GAN6 216 aaKnown RBP16.21■□□□□ 0.19
PTPRF-209ENST00000438120 DTD2Q96FN9 168 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 MAP3K3Q99759 626 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 FBRSQ9HAH7 460 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 SCML1Q9UN30 329 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 SGSHP51688 502 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 ZNF140P52738 457 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-209ENST00000438120 AKR1C2P52895 323 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 STK11Q15831 433 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 COQ5Q5HYK3 327 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 NADSYN1Q6IA69 706 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 ALG8Q9BVK2 526 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 MYNNQ9NPC7 610 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 HOXB9P17482 250 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-209ENST00000438120 PSMB10P40306 273 aa16.21■□□□□ 0.19
PTPRF-209ENST00000438120 CBARPQ8N350 705 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-209ENST00000438120 HMX3A6NHT5 357 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 DRGXA6NNA5 263 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 CRTAPO75718 401 aaPredicted RBP16.21■□□□□ 0.18
PTPRF-209ENST00000438120 KNG1P01042 644 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 GYPBP06028 91 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 HBQ1P09105 142 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 CHCHD4Q8N4Q1 142 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 OR51T1Q8NGJ9 327 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 SORT1Q99523 831 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 ZNF649Q9BS31 505 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 SLC25A18Q9H1K4 315 aa16.21■□□□□ 0.18
PTPRF-209ENST00000438120 AK6Q9Y3D8 172 aaKnown RBP16.21■□□□□ 0.18
PTPRF-209ENST00000438120 MROH6A6NGR9 719 aa16.2■□□□□ 0.18
PTPRF-209ENST00000438120 FBP2O00757 339 aa16.2■□□□□ 0.18
PTPRF-209ENST00000438120 PHYHO14832 338 aa16.2■□□□□ 0.18
PTPRF-209ENST00000438120 ONECUT3O60422 494 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-209ENST00000438120 MYF6P23409 242 aa16.2■□□□□ 0.18
PTPRF-209ENST00000438120 NKX3-2P78367 333 aa16.2■□□□□ 0.18
PTPRF-209ENST00000438120 PPA1Q15181 289 aa16.2■□□□□ 0.18
PTPRF-209ENST00000438120 NDNFQ8TB73 568 aa16.2■□□□□ 0.18
PTPRF-209ENST00000438120 FKBP10Q96AY3 582 aa16.2■□□□□ 0.18
PTPRF-209ENST00000438120 CDH20Q9HBT6 801 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms