RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 AKTIPQ9H8T0 292 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 PNPOQ9NVS9 261 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 TAS2R10Q9NYW0 307 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 MED11Q9P086 117 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 HAO1Q9UJM8 370 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 RAP2CQ9Y3L5 183 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 PCNX3Q9H6A9 2034 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 A0A1W2PRB8 838 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 EMC8O43402 210 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 UTS2O95399 124 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 C6orf47O95873 294 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 TUBBP07437 444 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 LHX2P50458 406 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 DIO3P55073 304 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 DLX5P56178 289 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 BST1Q10588 318 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 ZNHIT3Q15649 155 aaPredicted RBP17.29■□□□□ 0.36
SF3A1-202ENST00000411423 NSUN5P2Q63ZY6 315 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 FIGNL1Q6PIW4 674 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 SZRD1Q7Z422 152 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 R3HCC1LQ7Z5L2 792 aaKnown RBP17.29■□□□□ 0.36
SF3A1-202ENST00000411423 CDRT4Q8N9R6 151 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 FAM110BQ8TC76 370 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 GPR151Q8TDV0 419 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 SLC9A6Q92581 669 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 MS4A4EQ96PG1 132 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 TRIB1Q96RU8 372 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 KLHDC3Q9BQ90 382 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 TUBA1CQ9BQE3 449 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 KCNJ16Q9NPI9 418 aa17.29■□□□□ 0.36
SF3A1-202ENST00000411423 RPH3AQ9Y2J0 694 aaPredicted RBP17.29■□□□□ 0.36
SF3A1-202ENST00000411423 ACTL6AO96019 429 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 CPN1P15169 458 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 ZNF136P52737 540 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 EMX2Q04743 252 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 SNTB1Q13884 538 aaKnown RBP17.28■□□□□ 0.36
SF3A1-202ENST00000411423 CCNJQ5T5M9 372 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 GDF7Q7Z4P5 450 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 IFNEQ86WN2 208 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 HOMEZQ8IX15 550 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 PM20D2Q8IYS1 436 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 C9orf106Q8NAJ2 232 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 OR4C3Q8NH37 302 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 PSMA8Q8TAA3 256 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 PAIP2Q9BPZ3 127 aaKnown RBP17.28■□□□□ 0.36
SF3A1-202ENST00000411423 FAM120CQ9NX05 1096 aaKnown RBP17.28■□□□□ 0.36
SF3A1-202ENST00000411423 ASIC5Q9NY37 505 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 PPP4R1LQ9P1A2 415 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 ABCG2Q9UNQ0 655 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 AKAP9Q99996 3911 aa17.28■□□□□ 0.36
SF3A1-202ENST00000411423 ABCA12Q86UK0 2595 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 TMEM120BA0PK00 339 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 KCNK2O95069 426 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 HMGN2P05204 90 aaKnown RBP17.27■□□□□ 0.36
SF3A1-202ENST00000411423 DPP4P27487 766 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 RPL14P50914 215 aaKnown RBP17.27■□□□□ 0.36
SF3A1-202ENST00000411423 CLDN18P56856 261 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 SRYQ05066 204 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 STX3Q13277 289 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 CPTPQ5TA50 214 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 ADGRE4PQ86SQ3 457 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 LACC1Q8IV20 430 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 OR4K17Q8NGC6 315 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 OR5M1Q8NGP8 315 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 CEP70Q8NHQ1 597 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 DUSP19Q8WTR2 217 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 OR5P2Q8WZ92 322 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 TLCD1Q96CP7 247 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 NPAS1Q99742 590 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 NUF2Q9BZD4 464 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 C3orf14Q9HBI5 128 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 TMBIM4Q9HC24 238 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 ZCCHC3Q9NUD5 404 aaKnown RBP17.27■□□□□ 0.36
SF3A1-202ENST00000411423 DKKL1Q9UK85 242 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.27■□□□□ 0.36
SF3A1-202ENST00000411423 MRPS18CQ9Y3D5 142 aaKnown RBP17.27■□□□□ 0.36
SF3A1-202ENST00000411423 KCNE3Q9Y6H6 103 aa17.27■□□□□ 0.36
SF3A1-202ENST00000411423 MBD3L4A6NDZ8 208 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 MBD3L3A6NE82 208 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 MBD3L5A6NJ08 208 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 CD8B2A6NJW9 211 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 TTC36A6NLP5 189 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 GMFGO60234 142 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 KCNH1O95259 989 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 OXSR1O95747 527 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 MYZAPP0CAP1 466 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 PRPS1L1P21108 318 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 TIMP3P35625 211 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 AGFG1P52594 562 aaKnown RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 DSCR4P56555 118 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 CLDN15P56746 228 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 CLDN8P56748 225 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 C21orf58P58505 322 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 PRR5P85299 388 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 LASP1Q14847 261 aaKnown RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 CAMKMTQ7Z624 323 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 LURAP1LQ8IV03 231 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 DMRTC2Q8IXT2 367 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 CLECL1Q8IZS7 167 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 CLEC4FQ8N1N0 589 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms