RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PRKAR1BP31321 381 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 IFNA8P32881 189 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 RPP38P78345 283 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 FUT5Q11128 374 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 FUT7Q11130 342 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 EXOSC7Q15024 291 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 LARS2Q15031 903 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 ELAVL1Q15717 326 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 MICAQ29983 383 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 EIPR1Q53HC9 387 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 PRSS48Q7RTY5 328 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 DEPDC4Q8N2C3 294 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 FCGR1BQ92637 280 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 HOXB13Q92826 284 aaPredicted RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 OTUB1Q96FW1 271 aaPredicted RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 STRADBQ9C0K7 418 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 PALMDQ9NP74 551 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 NECTIN3Q9NQS3 549 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 ENPP5Q9UJA9 477 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 CLCA3PQ9Y6N3 262 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 A0A1W2PPW3 197 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 EFCAB7A8K855 629 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 C17orf105B2RV13 164 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 RGS10O43665 173 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 LRP3O75074 770 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 CPNE3O75131 537 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 ONECUT2O95948 504 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 CYC1P08574 325 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 CCKBRP32239 447 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 IL1RL1Q01638 556 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 NPTX1Q15818 432 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 MOGQ16653 247 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 DUSP7Q16829 419 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 NKAIN1Q4KMZ8 207 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF311Q5JNZ3 666 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 DCST2Q5T1A1 773 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 NAXDQ8IW45 347 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 TMEM151BQ8IW70 566 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 OR10G2Q8NGC3 310 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 OR14A16Q8NHC5 309 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 CNIH3Q8TBE1 160 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 DAZLQ92904 295 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 DCUN1D5Q9BTE7 237 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 EDEM2Q9BV94 578 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 SLC38A1Q9H2H9 487 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 FOLH1BQ9HBA9 442 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 Q9N2J8 555 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 WARS2Q9UGM6 360 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 IGLV3-12A0A075B6K2 115 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 IGKV3D-11A0A0A0MRZ8 115 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 PTGES3LE9PB15 166 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 TGFBR3LH3BV60 316 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 FOXD2O60548 495 aaPredicted RBP16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 DBIP07108 87 aaKnown RBP16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 THBS1P07996 1170 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 GABRA3P34903 492 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 RORAP35398 523 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 GGT2P36268 569 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 PGDP52209 483 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 SPIBQ01892 262 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 EMX1Q04741 257 aaPredicted RBP16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 CHRNEQ04844 493 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 ZSWIM7Q19AV6 140 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF829Q3KNS6 432 aaPredicted RBP16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 SYT6Q5T7P8 510 aaPredicted RBP16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 PRAMEF17Q5VTA0 474 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 PWWP2BQ6NUJ5 590 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 TSEN54Q7Z6J9 526 aaKnown RBP16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF619Q8N2I2 560 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 PARP8Q8N3A8 854 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 PLPP5Q8NEB5 264 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 FAR1Q8WVX9 515 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 BORCS5Q969J3 196 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 SDF2Q99470 211 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF350Q9GZX5 532 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 OR10A5Q9H207 317 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF556Q9HAH1 456 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 FBXO8Q9NRD0 319 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 PNO1Q9NRX1 252 aaKnown RBP16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 PAK1IP1Q9NWT1 392 aaPredicted RBP16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 ERVK-19Q9WJR5 959 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 CLDN16Q9Y5I7 305 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 KCNE3Q9Y6H6 103 aa16.91■□□□□ 0.3
CCDC88C-203ENST00000389856 TCRBV16S1A1N1A0A5B0 115 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 FAM20BO75063 409 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 S1PR1P21453 382 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 ACVR2AP27037 513 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 SOX18P35713 384 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 MAP3K8P41279 467 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 OR1E2P47887 323 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 PDX1P52945 283 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 MC2RQ01718 297 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 RHAGQ02094 409 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 COL9A2Q14055 689 aaPredicted RBP16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 NSDHLQ15738 373 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 FGD3Q5JSP0 725 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 OR52P1PQ8NH57 321 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 CMKLR1Q99788 373 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 G6PC3Q9BUM1 346 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms