RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TNFRSF17Q02223 184 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 NFIXQ14938 502 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 HEPHL1Q6MZM0 1159 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 GOLGA7Q7Z5G4 137 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 KLBQ86Z14 1044 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 SLC25A46Q96AG3 418 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 PCYT2Q99447 389 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 TBX5Q99593 518 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 POT1Q9NUX5 634 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ASH2LQ9UBL3 628 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF850A8MQ14 1090 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 GPR39O43194 453 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF30P17039 623 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ACTR1BP42025 376 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 PAFAH1B3Q15102 231 aaKnown RBP11.98□□□□□ -0.49
COL6A3-203ENST00000353578 PHYHD1Q5SRE7 291 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 SLC29A4Q7RTT9 530 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 GPR135Q8IZ08 494 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 OR5P2Q8WZ92 322 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 PIM2Q9P1W9 311 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 RPP14O95059 124 aaKnown RBP11.98□□□□□ -0.49
COL6A3-203ENST00000353578 NT5EP21589 574 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 PLEKHS1Q5SXH7 462 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 DIP2CQ9Y2E4 1556 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 C4BPAP04003 597 aaKnown RBP11.98□□□□□ -0.49
COL6A3-203ENST00000353578 THBS2P35442 1172 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF136P52737 540 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 FAM205BPQ63HN1 556 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ZC3H3Q8IXZ2 948 aaKnown RBP11.98□□□□□ -0.49
COL6A3-203ENST00000353578 TMEM74Q96NL1 305 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 KATNB1Q9BVA0 655 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 RAB6AP20340 208 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 OR10A3P58181 314 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 TMEM62Q0P6H9 643 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 MOGAT2Q3SYC2 334 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 SIDT2Q8NBJ9 832 aaKnown RBP11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ADPRHL1Q8NDY3 354 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 UTS2RQ9UKP6 389 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 H7BY64 318 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 OR1F1O43749 312 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ETV4P43268 484 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ADGRG3Q86Y34 549 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 MSI2Q96DH6 328 aaKnown RBP11.98□□□□□ -0.49
COL6A3-203ENST00000353578 CHRM5P08912 532 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-203ENST00000353578 HOXA1P49639 335 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-203ENST00000353578 MELKQ14680 651 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SEZ6Q53EL9 994 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 TMPRSS7Q7RTY8 843 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SPRED1Q7Z699 444 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 C20orf85Q9H1P6 137 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 EXOSC3Q9NQT5 275 aaKnown RBP11.97□□□□□ -0.49
COL6A3-203ENST00000353578 TJP1Q07157 1748 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SIGLEC6O43699 453 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 DPM1O60762 260 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SOX14O95416 240 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 THBS1P07996 1170 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 RAC2P15153 192 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 CX3CR1P49238 355 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 PRSS42Q7Z5A4 293 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 NPAS4Q8IUM7 802 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SLC25A36Q96CQ1 311 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF582Q96NG8 517 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SLC38A3Q99624 504 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 DHRS4Q9BTZ2 278 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 NMNAT2Q9BZQ4 307 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ASCC3Q8N3C0 2202 aaKnown RBP11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SPATA31C2B4DYI2 1134 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 MMP3P08254 477 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 CTSEP14091 401 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 DRD5P21918 477 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 GDF10P55107 478 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ITPRIPL2Q3MIP1 535 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 RTP4Q96DX8 246 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 CLEC4EQ9ULY5 219 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 UBIAD1Q9Y5Z9 338 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 APOA2P02652 100 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ACP2P11117 423 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ITPK1Q13572 414 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 VSIG10LQ86VR7 867 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 MIR1-1HGQ9H1L0 117 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 OARD1Q9Y530 152 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 HNRNPA3P51991 378 aaKnown RBP11.97□□□□□ -0.49
COL6A3-203ENST00000353578 AKR1C2P52895 323 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 RAG2P55895 527 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 PMPCAQ10713 525 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 P2RY14Q15391 338 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 MINDY4Q4G0A6 757 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 VARS2Q5ST30 1063 aaKnown RBP11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ARHGAP40Q5TG30 622 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF620Q6ZNG0 422 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ACOT7LQ6ZUV0 252 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ADGRG5Q8IZF4 528 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 THEM6Q8WUY1 208 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ACAD8Q9UKU7 415 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 PIK3C2BO00750 1634 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 C1GALT1C1LP0DN25 315 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 AMD1P17707 334 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 TECRLQ5HYJ1 363 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 MFSD9Q8NBP5 474 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 USP21Q9UK80 565 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms