RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 RBBP4Q09028 425 aa25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 CEACAM7Q14002 265 aa25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 TYW3Q6IPR3 259 aaKnown RBP25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 FRRS1Q6ZNA5 592 aa25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 HMGN2P46Q86SG4 172 aa25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 TREX2Q9BQ50 279 aaPredicted RBP25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 SLC38A1Q9H2H9 487 aa25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 LRMDAQ9H2I8 198 aa25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 LRFN1Q9P244 771 aa25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 PRPF19Q9UMS4 504 aaKnown RBP25.05■■□□□ 1.6
CHMP4B-201ENST00000217402 ELOVL7A1L3X0 281 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 HS6ST1O60243 411 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 DNAJA2O60884 412 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 ABCB7O75027 752 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 UTS2O95399 124 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 FAM87AP0C7U9 286 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 PCGF2P35227 344 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 LACTB2Q53H82 288 aaPredicted RBP25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 REEP3Q6NUK4 255 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 ERICH5Q6P6B1 374 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 LRRC74BQ6ZQY2 392 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 MICU2Q8IYU8 434 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 ABHD17AQ96GS6 310 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 QRSL1Q9H0R6 528 aaKnown RBP25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 CALML5Q9NZT1 146 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 ANGPT4Q9Y264 503 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 PKD1L2Q7Z442 2459 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 OR5H15A6NDH6 313 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 DNAJC8O75937 253 aaPredicted RBP25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 MSX2P35548 267 aaPredicted RBP25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 EFR3AQ14156 821 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 OR1C1Q15619 314 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 LINC00303Q3SY05 128 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 SPINK14Q6IE38 97 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 GPALPP1Q8IXQ4 340 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 DND1Q8IYX4 353 aaKnown RBP25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 HIPK4Q8NE63 616 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 HGDQ93099 445 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 SIGLEC12Q96PQ1 595 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 CADM1Q9BY67 442 aaKnown RBP25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 CD300AQ9UGN4 299 aa25.04■■□□□ 1.6
CHMP4B-201ENST00000217402 KIAA0513O60268 411 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 SORBS2O94875 1100 aaKnown RBP25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 PDGFAP04085 211 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 GRAMD1BQ3KR37 738 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 IGFL2Q6UWQ7 119 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 RTL4Q6ZR62 310 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 NUP54Q7Z3B4 507 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 MDGA2Q7Z553 956 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 ZNF227Q86WZ6 799 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 ZNF619Q8N2I2 560 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 MCUR1Q96AQ8 359 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 NODALQ96S42 347 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 RNF32Q9H0A6 362 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 POLE3Q9NRF9 147 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 EGFL7Q9UHF1 273 aa25.03■■□□□ 1.6
CHMP4B-201ENST00000217402 EXPH5Q8NEV8 1989 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 ERICH4A6NGS2 130 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 K7EM74 188 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 TP53I11O14683 189 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 GSC2O15499 205 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 PGM3O95394 542 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 HSD17B1P14061 328 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 PGM1P36871 562 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 DCTP40126 519 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 RNF144AP50876 292 aaPredicted RBP25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 KCNAB2Q13303 367 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 ARHGAP24Q8N264 748 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 METTL25Q8N6Q8 603 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 OR4C3Q8NH37 302 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 BBS10Q8TAM1 723 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 TMCO6Q96DC7 493 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP25.02■■□□□ 1.65e-9■■■■■ 31.9
CHMP4B-201ENST00000217402 RYDENQ9NUL5 291 aaKnown RBP25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 CSAG2Q9Y5P2 127 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 CHCHD2Q9Y6H1 151 aaPredicted RBP25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 CACNA1GO43497 2377 aa25.02■■□□□ 1.6
CHMP4B-201ENST00000217402 CENPVL1A0A0U1RR11 272 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 GSTA4O15217 222 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 NEURL1O76050 574 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 CCL3P10147 92 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 CD97P48960 835 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 BICRALQ6AI39 1079 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 ZNF614Q8N883 585 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 HAS2Q92819 552 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 ZG16BQ96DA0 208 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 SGCZQ96LD1 299 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 SAP130Q9H0E3 1048 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 TRIM45Q9H8W5 580 aaPredicted RBP25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 TP53TG5Q9Y2B4 290 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 USP24Q9UPU5 2620 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 DSPPQ9NZW4 1301 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 A0A0G2JPF8 293 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 HNRNPCL2B2RXH8 293 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 HNRNPCL3B7ZW38 293 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 HNRNPCL4P0DMR1 293 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 PRAMEF20Q5VT98 475 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 YTHDF3Q7Z739 585 aaKnown RBP25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 HPS6Q86YV9 775 aa25.01■■□□□ 1.59
CHMP4B-201ENST00000217402 SLC30A8Q8IWU4 369 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms