RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	CPA2	P48052	419 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	FOXA1	P55317	472 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	PRR5	P85299	388 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	SH2D4B	Q5SQS7	431 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	FBXW10	Q5XX13	1052 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	SPNS3	Q6ZMD2	512 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	SH2D5	Q6ZV89	423 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	SEM1	Q6ZVN7	128 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	GRAMD2A	Q8IUY3	354 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	LIX1L	Q8IVB5	337 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	TRIM42	Q8IWZ5	723 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	CHDH	Q8NE62	594 aa	Predicted RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	EPS8L3	Q8TE67	593 aa	Known RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	EFHD2	Q96C19	240 aa	Predicted RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	ELP4	Q96EB1	424 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	RMND5B	Q96G75	393 aa	Predicted RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	PPP3R2	Q96LZ3	170 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	LMF2	Q9BU23	707 aa	Known RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	POLDIP3	Q9BY77	421 aa	Known RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	TBL1XR1	Q9BZK7	514 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	ROPN1B	Q9BZX4	212 aa	Predicted RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	REEP4	Q9H6H4	257 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	ROPN1	Q9HAT0	212 aa	Predicted RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	ACSS1	Q9NUB1	689 aa	Predicted RBP	12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	F8	P00451	2351 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	PSMG1	O95456	288 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	IL33	O95760	270 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	PRPS2	P11908	318 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	FCGR2A	P12318	317 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	ZNF136	P52737	540 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	GFRA1	P56159	465 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	RPS3A	P61247	264 aa	Known RBP	12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	PSG6	Q00889	435 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	GLYR1	Q49A26	553 aa	Predicted RBP	12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	EMB	Q6PCB8	327 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	ZCCHC12	Q6PEW1	402 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	NPSR1	Q6W5P4	371 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	P4HA3	Q7Z4N8	544 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	C10orf107	Q8IVU9	208 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	ZZZ3	Q8IYH5	903 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	KIRREL3	Q8IZU9	778 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	C4orf33	Q8N1A6	199 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	CDRT4	Q8N9R6	151 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	RELL2	Q8NC24	303 aa	Predicted RBP	12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	SIMC1	Q8NDZ2	872 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	RNF138	Q8WVD3	245 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	MS4A4E	Q96PG1	132 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	SH3GL2	Q99962	352 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	PIGQ	Q9BRB3	760 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	CLEC4M	Q9H2X3	399 aa	Predicted RBP	12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	GLIPR2	Q9H4G4	154 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	ANKZF1	Q9H8Y5	726 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	ATAD3A	Q9NVI7	634 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	PACSIN3	Q9UKS6	424 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	SPG11	Q96JI7	2443 aa		12.79	□□□□□ -0.36
TPM1-223	ENST00000560445	CLCA1	A8K7I4	914 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	UPK1A	O00322	258 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	SCO2	O43819	266 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	CTAG2	O75638	210 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	SNUPN	O95149	360 aa	Known RBP	12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	RCBTB2	O95199	551 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	FGF4	P08620	206 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	KRT16	P08779	473 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	HPGD	P15428	266 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	ZNF708	P17019	499 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	POU3F2	P20265	443 aa	Predicted RBP	12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	SOX18	P35713	384 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	SERPINB4	P48594	390 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	MANF	P55145	182 aa	Known RBP	12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	DLX5	P56178	289 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	RPL38	P63173	70 aa	Known RBP	12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	OCRL	Q01968	901 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	SRY	Q05066	204 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	C17orf67	Q0P5P2	114 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	HSPB3	Q12988	150 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	PCLAF	Q15004	111 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	RAET1L	Q5VY80	246 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	KANK2	Q63ZY3	851 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	CLEC6A	Q6EIG7	209 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	MISP	Q8IVT2	679 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	DDIAS	Q8IXT1	998 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	NAXE	Q8NCW5	288 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	GPR151	Q8TDV0	419 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	GFM2	Q969S9	779 aa	Known RBP	12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	DOCK7	Q96N67	2140 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	PRPF18	Q99633	342 aa	Known RBP	12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	TUBA1C	Q9BQE3	449 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	PAQR5	Q9NXK6	330 aa	Predicted RBP	12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	SH3BP4	Q9P0V3	963 aa		12.78	□□□□□ -0.36
TPM1-223	ENST00000560445	CSMD1	Q96PZ7	3565 aa		12.77	□□□□□ -0.36
TPM1-223	ENST00000560445		A0A087WZY1	265 aa		12.77	□□□□□ -0.37
TPM1-223	ENST00000560445	C2orf72	A6NCS6	295 aa		12.77	□□□□□ -0.37
TPM1-223	ENST00000560445		A6NNC1	897 aa		12.77	□□□□□ -0.37
TPM1-223	ENST00000560445	LYPLA1	O75608	230 aa	Predicted RBP	12.77	□□□□□ -0.37
TPM1-223	ENST00000560445	SLU7	O95391	586 aa	Known RBP	12.77	□□□□□ -0.37
TPM1-223	ENST00000560445	EPX	P11678	715 aa		12.77	□□□□□ -0.37
TPM1-223	ENST00000560445	HK1	P19367	917 aa		12.77	□□□□□ -0.37
TPM1-223	ENST00000560445	DNASE1	P24855	282 aa		12.77	□□□□□ -0.37
TPM1-223	ENST00000560445	GABRA3	P34903	492 aa		12.77	□□□□□ -0.37
TPM1-223	ENST00000560445	PCYT1A	P49585	367 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 46 ms