RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TM2D1Q9BX74 207 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.2□□□□□ -1.9
SCFD1-221ENST00000556534 TMEM9Q9P0T7 183 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 SH3BGRL2Q9UJC5 107 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 TRBV7-9A0A0J9YWB2 115 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 NPIPA2E9PIF3 369 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 CDX4O14627 284 aaPredicted RBP3.19□□□□□ -1.9
SCFD1-221ENST00000556534 ADAM12O43184 909 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 MT-ATP6P00846 226 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 PGK2P07205 417 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 FUT1P19526 365 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 IGHV1-2P23083 117 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 METAP1P53582 386 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 PRKCEQ02156 737 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 SERTAD2Q14140 314 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 KARSQ15046 597 aaKnown RBP3.19□□□□□ -1.9
SCFD1-221ENST00000556534 INAQ16352 499 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 ISXQ2M1V0 245 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 LRIT3Q3SXY7 679 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 LGSNQ5TDP6 509 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 ZNF544Q6NX49 715 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 RBM43Q6ZSC3 357 aaKnown RBP3.19□□□□□ -1.9
SCFD1-221ENST00000556534 GPBP1Q86WP2 473 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 APOBEC3FQ8IUX4 373 aaKnown RBP3.19□□□□□ -1.9
SCFD1-221ENST00000556534 LEMD2Q8NC56 503 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 CCDC26Q8TAB7 109 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 PHYHIPLQ96FC7 376 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 KIR2DL4Q99706 377 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 DPH7Q9BTV6 452 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 NDUFAF3Q9BU61 184 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 FTHL17Q9BXU8 183 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 MEPEQ9NQ76 525 aaPredicted RBP3.19□□□□□ -1.9
SCFD1-221ENST00000556534 SOHLH2Q9NX45 425 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 DPM3Q9P2X0 92 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 FZR1Q9UM11 496 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 DHRS7Q9Y394 339 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 UBE4BO95155 1302 aa3.19□□□□□ -1.9
SCFD1-221ENST00000556534 FBLL1A6NHQ2 334 aaKnown RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 ZFP92A6NM28 416 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 NDC80O14777 642 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 CPLX1O14810 134 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 RASGRF2O14827 1237 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 LATO43561 262 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 IFNB1P01574 187 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 PROS1P07225 676 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 HEXBP07686 556 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 ZCCHC18P0CG32 403 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 AKT2P31751 481 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 STK19P49842 368 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 SLC26A5P58743 744 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 GMFBP60983 142 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 BTG3Q14201 252 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 CEBPEQ15744 281 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 GLYR1Q49A26 553 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 PNCKQ6P2M8 343 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 HACD2Q6Y1H2 254 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 GOLGA7Q7Z5G4 137 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 TAF8Q7Z7C8 310 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 CCDC36Q8IYA8 594 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 PRR22Q8IZ63 422 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 ZNF540Q8NDQ6 660 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 LINC01006Q8NI28 216 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 NSMCE2Q96MF7 247 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 C19orf24Q9BVV8 132 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 ELOVL4Q9GZR5 314 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 NGBQ9NPG2 151 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 EXOSC3Q9NQT5 275 aaKnown RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 FAM114A2Q9NRY5 505 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 HOMER3Q9NSC5 361 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 DCAF13Q9NV06 445 aaKnown RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 KLRF1Q9NZS2 232 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 APOBEC3BQ9UH17 382 aaKnown RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 KLHL21Q9UJP4 597 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 BARX2Q9UMQ3 279 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 AURKCQ9UQB9 309 aa3.18□□□□□ -1.9
SCFD1-221ENST00000556534 TDRD6O60522 2096 aaKnown RBP3.18□□□□□ -1.9
SCFD1-221ENST00000556534 RAD54L2Q9Y4B4 1467 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 IGLV8-61A0A075B6I0 122 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 ARHGAP42A6NI28 874 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 LYPD3O95274 346 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 SDC1P18827 310 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 DNAJB1P25685 340 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 ACVR1BP36896 505 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 RIPPLY3P57055 190 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 ZP4Q12836 540 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 SPP2Q13103 211 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 IL18R1Q13478 541 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 TAF7Q15545 349 aaPredicted RBP3.17□□□□□ -1.9
SCFD1-221ENST00000556534 CARTPTQ16568 116 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 CCDC40Q4G0X9 1142 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 UFSP1Q6NVU6 142 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 LEG1Q6P5S2 330 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 FAM159AQ6UWV7 190 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 SYVN1Q86TM6 617 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 SLC34A3Q8N130 599 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 CENPSQ8N2Z9 138 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 ARFGAP2Q8N6H7 521 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 IPMKQ8NFU5 416 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 WDR36Q8NI36 951 aaKnown RBP3.17□□□□□ -1.9
SCFD1-221ENST00000556534 FAM122AQ96E09 287 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms