RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 STK19P49842 368 aaPredicted RBP3.25□□□□□ -1.89
VPS29-205ENST00000548539 IST1P53990 364 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 SLC10A1Q14973 349 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 CHI3L2Q15782 390 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 KRTAP13-3Q3SY46 172 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 ZNF311Q5JNZ3 666 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 FAM182AQ5T1J6 154 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 CBLN3Q6UW01 205 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 BTNL3Q6UXE8 466 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 HIPK1Q86Z02 1210 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 ARL14Q8N4G2 192 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 FADS6Q8N9I5 356 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 CSNK1G2-AS1Q8NCQ2 148 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 MAPK1IP1LQ8NDC0 245 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 STKLD1Q8NE28 680 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 BEST4Q8NFU0 473 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 OR10T2Q8NGX3 314 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 RAB7BQ96AH8 199 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 PIWIL1Q96J94 861 aaKnown RBP3.25□□□□□ -1.89
VPS29-205ENST00000548539 C4orf36Q96KX1 117 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 MCCC1Q96RQ3 725 aaPredicted RBP3.25□□□□□ -1.89
VPS29-205ENST00000548539 TPPP3Q9BW30 176 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 MRPL13Q9BYD1 178 aaKnown RBP3.25□□□□□ -1.89
VPS29-205ENST00000548539 TRIM9Q9C026 710 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 LPAR2Q9HBW0 351 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.25□□□□□ -1.89
VPS29-205ENST00000548539 RAI14Q9P0K7 980 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 TMCC3Q9ULS5 477 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 B9D1Q9UPM9 204 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 EXOSC1Q9Y3B2 195 aaKnown RBP3.25□□□□□ -1.89
VPS29-205ENST00000548539 AP4B1Q9Y6B7 739 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 FAM74A7A6NL05 159 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 SAP18O00422 153 aaKnown RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 PPIHO43447 177 aaKnown RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 ZNF253O75346 499 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 SH3BGRLO75368 114 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 ANP32DO95626 131 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 CSF2P04141 144 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 ASNSP08243 561 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 IGFBP1P08833 259 aaPredicted RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 UQCRBP14927 111 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 PVRP15151 417 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 ACADSP16219 412 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 SHC1P29353 583 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 HMGCS2P54868 508 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 OSTNP61366 133 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 RPS6P62753 249 aaKnown RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 IL9RQ01113 521 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 LTB4RQ15722 352 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 MAPK6Q16659 721 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 CCDC57Q2TAC2 916 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 SLC22A6Q4U2R8 563 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 FAM74A3Q4VXF1 159 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 NCR3LG1Q68D85 454 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 LRRC8BQ6P9F7 803 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 CENPUQ71F23 418 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 POM121L12Q8N7R1 296 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 ZNF540Q8NDQ6 660 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 IPMKQ8NFU5 416 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 TOMM40LQ969M1 308 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 C18orf25Q96B23 403 aaPredicted RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 PUS3Q9BZE2 481 aaKnown RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 TRIM6Q9C030 488 aaPredicted RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 RHOJQ9H4E5 214 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 DHX33Q9H6R0 707 aaKnown RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 AMBNQ9NP70 447 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 MEPEQ9NQ76 525 aaPredicted RBP3.24□□□□□ -1.89
VPS29-205ENST00000548539 TIGARQ9NQ88 270 aa3.24□□□□□ -1.89
VPS29-205ENST00000548539 AATFQ9NY61 560 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS29-205ENST00000548539 IGHV3OR16-12A0A075B7B8 117 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 A0A1B0GWJ7 208 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 SRRM5B3KS81 715 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 E9PAM4 449 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 CPLX1O14810 134 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 JAK2O60674 1132 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 TM7SF2O76062 418 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 ALPIP09923 528 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 ATP6V1C1P21283 382 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 PAX7P23759 505 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 SOX6P35712 828 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 MAGEA5P43359 124 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 PLOD1Q02809 727 aaPredicted RBP3.23□□□□□ -1.89
VPS29-205ENST00000548539 SNTB2Q13425 540 aaKnown RBP3.23□□□□□ -1.89
VPS29-205ENST00000548539 LPAL2Q16609 132 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 PPP1R3AQ16821 1122 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 DCAF4L1Q3SXM0 396 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 TMEM52BQ4KMG9 183 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 LINC01620Q4KN68 170 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 SEL1L3Q68CR1 1132 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 CYS1Q717R9 158 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 PARGQ86W56 976 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 UNC5CLQ8IV45 518 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 NAXDQ8IW45 347 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 FNDC8Q8TC99 324 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 VPS39Q96JC1 886 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 TMEM121Q9BTD3 319 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 NFKBIZQ9BYH8 718 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 ZBP1Q9H171 429 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 SLC25A51Q9H1U9 297 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 RIBC2Q9H4K1 309 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms