RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CHMP24386 653 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 GSTT1P30711 240 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 CRISP1P54107 249 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 POU6F2P78424 691 aaPredicted RBP19.25■□□□□ 0.67
VPS28-209ENST00000528142 PSG6Q00889 435 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 ZNF155Q12901 538 aaPredicted RBP19.25■□□□□ 0.67
VPS28-209ENST00000528142 LARS2Q15031 903 aaKnown RBP19.25■□□□□ 0.67
VPS28-209ENST00000528142 PTGES3Q15185 160 aaKnown RBP19.25■□□□□ 0.67
VPS28-209ENST00000528142 GPR68Q15743 365 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 SMN1Q16637 294 aaKnown RBP19.25■□□□□ 0.67
VPS28-209ENST00000528142 PEAR1Q5VY43 1037 aaPredicted RBP19.25■□□□□ 0.67
VPS28-209ENST00000528142 TTLL10Q6ZVT0 673 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 OR4C6Q8NH72 309 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 RHOXF1Q8NHV9 184 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 DIO2Q92813 273 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 PMM1Q92871 262 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 MVB12AQ96EY5 273 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 DGAT2Q96PD7 388 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 TSC22D3Q99576 134 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 CTPS2Q9NRF8 586 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 LANCL2Q9NS86 450 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 SCN2AQ99250 2005 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 CCDC160A6NGH7 325 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 ZAR1LA6NP61 321 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 A8MU76 341 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 OSMP13725 252 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 SSTR4P31391 388 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 TRHRP34981 398 aaPredicted RBP19.25■□□□□ 0.67
VPS28-209ENST00000528142 GSSP48637 474 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 SLC35A2P78381 396 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 SQSTM1Q13501 440 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 RAB39AQ14964 217 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 NEDD8Q15843 81 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 NLGN4XQ8N0W4 816 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 LINC00471Q8N535 108 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 FAM81AQ8TBF8 368 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 NODALQ96S42 347 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 TUBA1CQ9BQE3 449 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 ZNF768Q9H5H4 540 aaKnown RBP19.25■□□□□ 0.67
VPS28-209ENST00000528142 FOLH1BQ9HBA9 442 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 NECTIN3Q9NQS3 549 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 POLE3Q9NRF9 147 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 TPRKBQ9Y3C4 175 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 BRINP1O60477 761 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 DBIP07108 87 aaKnown RBP19.24■□□□□ 0.67
VPS28-209ENST00000528142 GABRB1P18505 474 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 GALNSP34059 522 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 KRT20P35900 424 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 FUT7Q11130 342 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 ILKQ13418 452 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 PRAMEF17Q5VTA0 474 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 FIGNL1Q6PIW4 674 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 CD300LDQ6UXZ3 194 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 OR4K5Q8NGD3 323 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 NMD3Q96D46 503 aaKnown RBP19.24■□□□□ 0.67
VPS28-209ENST00000528142 VSTM2LQ96N03 204 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 CACYBPQ9HB71 228 aaKnown RBP19.24■□□□□ 0.67
VPS28-209ENST00000528142 ZNF226Q9NYT6 803 aa19.24■□□□□ 0.67
VPS28-209ENST00000528142 HEMK1Q9Y5R4 338 aaPredicted RBP19.24■□□□□ 0.67
VPS28-209ENST00000528142 CYP7B1O75881 506 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 KCNK2O95069 426 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 GUSBP08236 651 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 TTKP33981 857 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 OR1D4P47884 311 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 UGT2B15P54855 530 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 RGS8P57771 180 aaPredicted RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 TAS2R41P59536 307 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 LSM11P83369 360 aaKnown RBP eCLIP19.23■□□□□ 0.67
VPS28-209ENST00000528142 HOXC5Q00444 222 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 TARDBPQ13148 414 aaKnown RBP eCLIP19.23■□□□□ 0.67
VPS28-209ENST00000528142 SERTAD2Q14140 314 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ZNF267Q14586 743 aaPredicted RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 NR0B2Q15466 257 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ZER1Q7Z7L7 766 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 DEPDC4Q8N2C3 294 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 FKBP10Q96AY3 582 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ZNF578Q96N58 590 aaPredicted RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 FANCEQ9HB96 536 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 SEMA4GQ9NTN9 838 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 SCN3BQ9NY72 215 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ERVK-18Q9QC07 812 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 DHCR7Q9UBM7 475 aaKnown RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 RSL24D1Q9UHA3 163 aaKnown RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 COMMD3-BMI1R4GMX3 469 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 CPSF4LA6NMK7 179 aaKnown RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 PEX12O00623 359 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 SIGLEC6O43699 453 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 CCNYL3P0C7X3 344 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 NID1P14543 1247 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 PCMT1P22061 227 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ALAS2P22557 587 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 IDH2P48735 452 aaKnown RBP19.23■□□□□ 0.67
VPS28-209ENST00000528142 ZNF136P52737 540 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 CSNK2BP67870 215 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 TEKQ02763 1124 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 BIKQ13323 160 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 EIPR1Q53HC9 387 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 ENTPD8Q5MY95 495 aa19.23■□□□□ 0.67
VPS28-209ENST00000528142 GTF2IRD2BQ6EKJ0 949 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms