RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 LRRC49Q8IUZ0 686 aa4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 NANPQ8TBE9 248 aa4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 FNDC8Q8TC99 324 aa4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 C11orf24Q96F05 449 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 AGAP3Q96P47 875 aa4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 RPP25Q9BUL9 199 aaKnown RBP4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 TRIM6Q9C030 488 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 RNF41Q9H4P4 317 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 JPT2Q9H910 190 aa4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 AMBNQ9NP70 447 aa4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 RBM28Q9NW13 759 aaKnown RBP4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 SMPD3Q9NY59 655 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 MRPL11Q9Y3B7 192 aaKnown RBP4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 SPACA6W5XKT8 324 aa4.31□□□□□ -1.72
HMGB1P46-201ENST00000520062 IGHV3-16A0A0C4DH30 117 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 TEX48A0A1B0GUV7 120 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 NDUFAF8A1L188 74 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 ZSCAN12O43309 604 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 UGT2B4P06133 528 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 NT5EP21589 574 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 PAX7P23759 505 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 IGFBP5P24593 272 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 OXTRP30559 389 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 RGS4P49798 205 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 METAP1P53582 386 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 UBE2V2Q15819 145 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 DCST2Q5T1A1 773 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 C9orf66Q5T8R8 295 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 EMBQ6PCB8 327 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 DPY19L4Q7Z388 723 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 SPEM1Q8N4L4 309 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 C4orf32Q8N8J7 132 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 PNPT1Q8TCS8 783 aaKnown RBP4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 MIPOL1Q8TD10 442 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 SHC3Q92529 594 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 N4BP2L2Q92802 583 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 MYLPFQ96A32 169 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 DHTKD1Q96HY7 919 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 ZNF597Q96LX8 424 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 OMDQ99983 421 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 CCDC28BQ9BUN5 200 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 NFKBIZQ9BYH8 718 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 PANK3Q9H999 370 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 ADGRL4Q9HBW9 690 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 ZNF446Q9NWS9 450 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 RAI14Q9P0K7 980 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 RNF14Q9UBS8 474 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 MUTYHQ9UIF7 546 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 MRPS33Q9Y291 106 aaKnown RBP4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 GSTK1Q9Y2Q3 226 aa4.3□□□□□ -1.72
HMGB1P46-201ENST00000520062 IGHV3OR16-12A0A075B7B8 117 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 ESYT2A0FGR8 921 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 CXCL11O14625 94 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 PPIHO43447 177 aaKnown RBP4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 MTX2O75431 263 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 SEMA4FO95754 770 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 RPS2P15880 293 aaKnown RBP4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 DPEP1P16444 411 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 GSK3BP49841 420 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 RPS6P62753 249 aaKnown RBP4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 ZNF33BQ06732 778 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 HYAL1Q12794 435 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 ZIC1Q15915 447 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 C17orf58Q2M2W7 97 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 SEL1L2Q5TEA6 688 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 FAM219BQ5XKK7 198 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 LRRC70Q7Z2Q7 622 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 PARGQ86W56 976 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 ZCCHC7Q8N3Z6 543 aaKnown RBP4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 CRYGNQ8WXF5 182 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 TADA1Q96BN2 335 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 DNAJA3Q96EY1 480 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 LRRC61Q9BV99 259 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 MRPL39Q9NYK5 338 aaKnown RBP4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 MDFICQ9P1T7 246 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 SMC3Q9UQE7 1217 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 PTCH1Q13635 1447 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 ATP10DQ9P241 1426 aa4.29□□□□□ -1.72
HMGB1P46-201ENST00000520062 A0A1W2PNV4 684 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 TRIM64CA6NLI5 447 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 H7C423 109 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 CASKO14936 926 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 OR1F1O43749 312 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 STX11O75558 287 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 JCHAINP01591 159 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 IGHV3-9P01782 118 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 WNT2P09544 360 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 PDHBP11177 359 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 CPN1P15169 458 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 PTGER3P43115 390 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 POU3F4P49335 361 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 ARHGDIAP52565 204 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 HMGN5P82970 282 aaKnown RBP4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 PJVKQ0ZLH3 352 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 RIPK1Q13546 671 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 ATXN7L3Q14CW9 347 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 PDK3Q15120 406 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 C14orf28Q4W4Y0 310 aa4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 CELF3Q5SZQ8 465 aaKnown RBP4.28□□□□□ -1.72
HMGB1P46-201ENST00000520062 TTC23Q5W5X9 447 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms