RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 GHRLQ9UBU3 117 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 MGAT4BQ9UQ53 548 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 IGHV3OR16-12A0A075B7B8 117 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 A0A0U1RQV5 110 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 TTC26A0AVF1 554 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 TRABD2BA6NFA1 517 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 MFSD2BA6NFX1 497 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ANKRD30BLA7E2S9 258 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF487B1APH4 448 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 H3BTX0 84 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 K7EPI3 171 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ALOX15BO15296 676 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 SMPD2O60906 423 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 VPS26AO75436 327 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 SCGB2A1O75556 95 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 DIRAS3O95661 229 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 CA3P07451 260 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 SNRPCP09234 159 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 WNT2P09544 360 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 HMGCLP35914 325 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 BRCC3P46736 316 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 HTR5AP47898 357 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 HSF2Q03933 536 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF33BQ06732 778 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ZP4Q12836 540 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 PDZK1IP1Q13113 114 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 CRMP1Q14194 572 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 CNPY1Q3B7I2 92 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 KRTAP21-2Q3LI59 83 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 MS4A13Q5J8X5 152 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 BEND6Q5SZJ8 279 aaPredicted RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 PNCKQ6P2M8 343 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 LEG1Q6P5S2 330 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 CATSPER4Q7RTX7 472 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ERASQ7Z444 233 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 NET1Q7Z628 596 aaPredicted RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 TSEN54Q7Z6J9 526 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 VPS36Q86VN1 386 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 MISPQ8IVT2 679 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 HSCBQ8IWL3 235 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 CCDC36Q8IYA8 594 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 SLC22A18ASQ8N1D0 253 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ZBTB44Q8NCP5 570 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 NFAM1Q8NET5 270 aaPredicted RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF671Q8TAW3 534 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 CCDC110Q8TBZ0 833 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 TBCKQ8TEA7 893 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 GIPC3Q8TF64 312 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 SELENOMQ8WWX9 145 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 DNAJA3Q96EY1 480 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 PIWIL1Q96J94 861 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ZBP1Q9H171 429 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 KAT8Q9H7Z6 458 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 AMBNQ9NP70 447 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 TRPV5Q9NQA5 729 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 DCAF13Q9NV06 445 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 KLRF1Q9NZS2 232 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 RAI14Q9P0K7 980 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ANKMY1Q9P2S6 941 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 ISY1Q9ULR0 285 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 FOXJ3Q9UPW0 622 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 AURKCQ9UQB9 309 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 DHRS7Q9Y394 339 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 RNF115Q9Y4L5 304 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 PARD3Q8TEW0 1356 aa2.21□□□□□ -2.06
CCDC88A-212ENST00000474059 TRAV9-2A0A087WT02 112 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 FBLL1A6NHQ2 334 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 CCT8L1PA6NM43 557 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 C11orf98E9PRG8 122 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 SAP18O00422 153 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 CHADO15335 359 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 LANCL1O43813 399 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 SRPX2O60687 465 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF253O75346 499 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 KBTBD11O94819 623 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 PIGRP01833 764 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 ANXA4P09525 319 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 GIG44P09565 113 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 GSTT2P0CG29 244 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 GSTT2BP0CG30 244 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 UMPSP11172 480 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 PVRP15151 417 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 PAICSP22234 425 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 CYP2F1P24903 491 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 STK19P49842 368 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 HMGCS2P54868 508 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 PRKCEQ02156 737 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 SCGB2A2Q13296 93 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 EXOSC2Q13868 293 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 EIF2B1Q14232 305 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 RAB35Q15286 201 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 ZIC1Q15915 447 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 CDKN3Q16667 212 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 UTF1Q5T230 341 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 SLC39A4Q6P5W5 647 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 ARSKQ6UWY0 536 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 HACD2Q6Y1H2 254 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF600Q6ZNG1 722 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms