RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 RASSF5Q8WWW0 418 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ARRDC3Q96B67 414 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ENAMQ9NRM1 1142 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 KCNE3Q9Y6H6 103 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 A0A0A6YYJ9 748 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 PRR23AA6NEV1 266 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 SOCS6O14544 535 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 OR1F1O43749 312 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 LIMS3P0CW19 117 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 LIMS4P0CW20 117 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ADH5P11766 374 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 CPEP16870 476 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ITGB7P26010 798 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ACVR1BP36896 505 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 CCR6P51684 374 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 DPTQ07507 201 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 TOR2AQ5JU69 321 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 PRICKLE2Q7Z3G6 844 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 C16orf62Q7Z3J2 963 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 OR8D4Q8NGM9 314 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 GCDHQ92947 438 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 PDXPQ96GD0 296 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 GDF15Q99988 308 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 GON7Q9BXV9 100 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 DDX31Q9H8H2 851 aaKnown RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 TM7SF3Q9NS93 570 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 H2AFY2Q9P0M6 372 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 A4GNTQ9UNA3 340 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ATF4P18848 351 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 CXCL3P19876 107 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ACADLP28330 430 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 SHC1P29353 583 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 CTNNB1P35222 781 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ZNF81P51508 661 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 COX10Q12887 443 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 PDE7AQ13946 482 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 NXPE4Q6UWF7 544 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 RPTNQ6XPR3 784 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 GDPGP1Q6ZNW5 385 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 LRRC17Q8N6Y2 441 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 TMIEQ8NEW7 156 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 GOT1L1Q8NHS2 421 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 AKAP1Q92667 903 aaKnown RBP eCLIP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 ZNF354BQ96LW1 612 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 C12orf66Q96MD2 445 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 BBS4Q96RK4 519 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 OSGEPL1Q9H4B0 414 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 SERHL2Q9H4I8 314 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 SPATA2Q9UM82 520 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 DIMT1Q9UNQ2 313 aaKnown RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 NCKAP1Q9Y2A7 1128 aa11.67□□□□□ -0.54
HDAC4-208ENST00000463007 PCYT1BQ9Y5K3 369 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-208ENST00000463007 LINC01553A4QN01 128 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 H3BSH0 61 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 SLC9A3R1O14745 358 aaPredicted RBP11.66□□□□□ -0.54
HDAC4-208ENST00000463007 FGBP02675 491 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 VSX2P58304 361 aaPredicted RBP11.66□□□□□ -0.54
HDAC4-208ENST00000463007 GPR176Q14439 515 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 ZNF628Q5EBL2 1059 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 C12orf73Q69YU5 71 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 SLC27A4Q6P1M0 643 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 CHMP1BQ7LBR1 199 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 UBE2Q1Q7Z7E8 422 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 CLDN22Q8N7P3 220 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 ING5Q8WYH8 240 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 SMPDL3AQ92484 453 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 MED30Q96HR3 178 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 MSLNLQ96KJ4 702 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 WDFY2Q96P53 400 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 ATF6BQ99941 703 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 OR51V1Q9H2C8 321 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 XKR8Q9H6D3 395 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 TRPM6Q9BX84 2022 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 FOXE1O00358 373 aaPredicted RBP11.66□□□□□ -0.54
HDAC4-208ENST00000463007 POP7O75817 140 aaKnown RBP11.66□□□□□ -0.54
HDAC4-208ENST00000463007 C1QBP02746 253 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 PIPP12273 146 aaPredicted RBP11.66□□□□□ -0.54
HDAC4-208ENST00000463007 NCBP2P52298 156 aaKnown RBP eCLIP11.66□□□□□ -0.54
HDAC4-208ENST00000463007 VRK2Q86Y07 508 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 OR10H4Q8NGA5 316 aa11.66□□□□□ -0.54
HDAC4-208ENST00000463007 EIF3KQ9UBQ5 218 aaKnown RBP11.66□□□□□ -0.54
HDAC4-208ENST00000463007 PPIEQ9UNP9 301 aaKnown RBP11.66□□□□□ -0.54
HDAC4-208ENST00000463007 DSPPQ9NZW4 1301 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 A0A087WUU8 490 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 ANTXRLA6NF34 631 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 LEUTXA8MZ59 168 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 TMPRSS11DO60235 418 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 PPP2R1BP30154 601 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 TALDO1P37837 337 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 SLC1A3P43003 542 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 GPR1P46091 355 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 KCNJ5P48544 419 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 EVX1P49640 407 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 PPP3R1P63098 170 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 KLHL22Q53GT1 634 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 PRAMEF14Q5SWL7 426 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 PRAMEF13Q5VWM6 474 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 SFTPA1Q8IWL2 248 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 OR9A1PQ8NGU1 263 aa11.65□□□□□ -0.54
HDAC4-208ENST00000463007 CEP76Q8TAP6 659 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms