RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 COQ8BQ96D53 544 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TM9SF2Q99805 663 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 NAA11Q9BSU3 229 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 GLIPR2Q9H4G4 154 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 SLC35A3Q9Y2D2 325 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 EXOSC1Q9Y3B2 195 aaKnown RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 RBM7Q9Y580 266 aaKnown RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 BRCA1P38398 1863 aaKnown RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 IQCMA0A1B0GVH7 501 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 K7EQS6 105 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ACOT7O00154 380 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 PSMD9O00233 223 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 CYB5AP00167 134 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 SPARCP09486 303 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 DRD3P35462 400 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 CARD17Q5XLA6 110 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 FAM71E1Q6IPT2 247 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 SLC48A1Q6P1K1 146 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 PAMR1Q6UXH9 720 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 CBLL1Q75N03 491 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TMPRSS9Q7Z410 1059 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 VRK2Q86Y07 508 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 FUNDC1Q8IVP5 155 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF548Q8NEK5 533 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 IFI44Q8TCB0 444 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 MS4A6EQ96DS6 147 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 C16orf58Q96GQ5 468 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF419Q96HQ0 510 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 KLHL31Q9H511 634 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 CXorf36Q9H7Y0 433 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 IL20RAQ9UHF4 553 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 VDAC3Q9Y277 283 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TET1Q8NFU7 2136 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 CCDC182A6NF36 153 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 MT-ND5P03915 603 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 PRKAR1AP10644 381 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ACPPP15309 386 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 SLC5A2P31639 672 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 VASPP50552 380 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 KCNAB1Q14722 419 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ARHGAP11AQ6P4F7 1023 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 RCBTB1Q8NDN9 531 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 DDIT4LQ96D03 193 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 EID2BQ96D98 161 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TEX37Q96LM6 180 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 AMDHD1Q96NU7 426 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 GABRG3Q99928 467 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TREX2Q9BQ50 279 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TUBA8Q9NY65 449 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 H0YJX3 145 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 SLITRK5O94991 958 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 INMTO95050 263 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ST6GAL1P15907 406 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 RPS3AP61247 264 aaKnown RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 DCAF7P61962 342 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 HSF2Q03933 536 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ODF4Q2M2E3 257 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF750Q32MQ0 723 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ERI1Q8IV48 349 aaKnown RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 FAR1Q8WVX9 515 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 BORCS5Q969J3 196 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 UTP4Q969X6 686 aaKnown RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 LRR1Q96L50 414 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 LRRC3BQ96PB8 259 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 GAL3ST1Q99999 423 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 UBQLN4Q9NRR5 601 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 USP22Q9UPT9 525 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 NEU3Q9UQ49 428 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 PEX16Q9Y5Y5 336 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 KIF13BQ9NQT8 1826 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TCRBV3S1A0A5B6 114 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 SLC22A1O15245 554 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TBX1O43435 398 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 FMO6PO60774 539 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 JRKO75564 520 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 FARS2O95363 451 aaKnown RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 HTR1AP08908 422 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 SBK3P0C264 359 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 PEPDP12955 493 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF28P17035 718 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 NAA10P41227 235 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 RORCP51449 518 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TUBA4AP68366 448 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 CHRNEQ04844 493 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 QPRTQ15274 297 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 KCTD21Q4G0X4 260 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 PSD4Q8NDX1 1056 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 OR52E2Q8NGJ4 325 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 NKD1Q969G9 470 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 WDR77Q9BQA1 342 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 DPH1Q9BZG8 443 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 PCED1AQ9H1Q7 454 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ARRDC1-AS1Q9H2J1 176 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 TRPV5Q9NQA5 729 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 CNIH4Q9P003 139 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 COMMD3Q9UBI1 195 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF443Q9Y2A4 671 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 RPH3AQ9Y2J0 694 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 IGLV3-16A0A075B6K0 115 aa6.94□□□□□ -1.3
SYNE1-213ENST00000448038 A0A075B6Q4 140 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms