RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 MXD4Q14582 209 aaPredicted RBP3.66□□□□□ -1.82
HMGB3-203ENST00000430118 PPP1R7Q15435 360 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 STX1AQ16623 288 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 ANKDD1AQ495B1 522 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 SIRPB2Q5JXA9 342 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 CTRB2Q6GPI1 263 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 TTC23LQ6PF05 361 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 FIP1L1Q6UN15 594 aaKnown RBP3.66□□□□□ -1.82
HMGB3-203ENST00000430118 MARK2Q7KZI7 788 aaKnown RBP3.66□□□□□ -1.82
HMGB3-203ENST00000430118 ADAMTSL2Q86TH1 951 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 SLC51BQ86UW2 128 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 ITIH5Q86UX2 942 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 VPS36Q86VN1 386 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 CD302Q8IX05 232 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 CDK20Q8IZL9 346 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 FBXW8Q8N3Y1 598 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 MAPKAPK5-AS1Q8N8E1 139 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 RNF149Q8NC42 400 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 RPLP0P6Q8NHW5 317 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 AGAP11Q8TF27 550 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 ASB5Q8WWX0 329 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 STARD8Q92502 1023 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 PEX13Q92968 403 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 HAUS1Q96CS2 278 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 GIMAP5Q96F15 307 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 WBP1Q96G27 269 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 NSL1Q96IY1 281 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 LMLNQ96KR4 655 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 BTBD9Q96Q07 612 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 TUBA1CQ9BQE3 449 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 ALKBH7Q9BT30 221 aaPredicted RBP3.66□□□□□ -1.82
HMGB3-203ENST00000430118 SLC39A8Q9C0K1 460 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 FAM124BQ9H5Z6 455 aaPredicted RBP3.66□□□□□ -1.82
HMGB3-203ENST00000430118 RPF1Q9H9Y2 349 aaKnown RBP3.66□□□□□ -1.82
HMGB3-203ENST00000430118 C6orf50Q9HD87 102 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 PHPT1Q9NRX4 125 aaPredicted RBP3.66□□□□□ -1.82
HMGB3-203ENST00000430118 ACOXLQ9NUZ1 547 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 RHBDL2Q9NX52 303 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 AIPL1Q9NZN9 384 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 BAIAP2L1Q9UHR4 511 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 GRID1Q9ULK0 1009 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 U3KQV3 271 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 IGSF10Q6WRI0 2623 aa3.66□□□□□ -1.82
HMGB3-203ENST00000430118 LAMA1P25391 3075 aa3.65□□□□□ -1.82
HMGB3-203ENST00000430118 PDCD11Q14690 1871 aaKnown RBP3.65□□□□□ -1.82
HMGB3-203ENST00000430118 ARPC4-TTLL3A0A0A6YYG9 625 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 IGKV6-21A0A0C4DH24 114 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 WDR91A4D1P6 747 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 CTAGE15A4D2H0 777 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 ANTXRLA6NF34 631 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 MYMKA6NI61 221 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 TRDMT1O14717 391 aaKnown RBP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 ATP6V0E1O15342 81 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 YKT6O15498 198 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 SULT1B1O43704 296 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 PRKNO60260 465 aaPredicted RBP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 NME2P1O60361 137 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 PFKFB2O60825 505 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 GLRA3O75311 464 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 DFFBO76075 338 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 B3GAT3O94766 335 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 KRT6AP02538 564 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 APOEP02649 317 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 KRT6BP04259 564 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 DLATP10515 647 aaKnown RBP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 SFTPCP11686 197 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 CDK4P11802 303 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 F3P13726 295 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 LIFP15018 202 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 ANPEPP15144 967 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 GNA11P29992 359 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 ALDH4A1P30038 563 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 NKX2-1P43699 371 aaPredicted RBP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 KRT6CP48668 564 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 ARPP19P56211 112 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 HSD17B7P56937 341 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 SLC26A5P58743 744 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 GALK2Q01415 458 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 MYL7Q01449 175 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 TWF1Q12792 350 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 ABRQ12979 859 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 DNAJC3Q13217 504 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 SCGB2A2Q13296 93 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 RUNX3Q13761 415 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 CYLC2Q14093 348 aaPredicted RBP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 ITIH4Q14624 930 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 PDGFRLQ15198 375 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 SF3B4Q15427 424 aaKnown RBP eCLIP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 TEAD2Q15562 447 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 XKR6Q5GH73 641 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 SLC8B1Q6J4K2 584 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 UNC5DQ6UXZ4 953 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 SIGLEC15Q6ZMC9 328 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 C9orf47Q6ZRZ4 202 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 CYP4V2Q6ZWL3 525 aaPredicted RBP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 RUFY3Q7L099 469 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 TRMT11Q7Z4G4 463 aaKnown RBP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 C1QL2Q7Z5L3 287 aa3.65□□□□□ -1.83
HMGB3-203ENST00000430118 CPEB2Q7Z5Q1 589 aaKnown RBP3.65□□□□□ -1.83
HMGB3-203ENST00000430118 CTAGE6Q86UF2 777 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms