RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MPP4Q96JB8 637 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 VN1R1Q9GZP7 353 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 RIBC2Q9H4K1 309 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 LANCL2Q9NS86 450 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 TEX10Q9NXF1 929 aaPredicted RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 HCN3Q9P1Z3 774 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 C5AR2Q9P296 337 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 KIF17Q9P2E2 1029 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 POLHQ9Y253 713 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ANGPT4Q9Y264 503 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 SDK2Q58EX2 2172 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 UGT2B11O75310 529 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 ALOX12BO75342 701 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 JRKO75564 520 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 IFNA14P01570 189 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 CPN2P22792 545 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 RYKP34925 604 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 POLR2IP36954 125 aaKnown RBP9.49□□□□□ -0.89
VPS53-202ENST00000389040 FRKP42685 505 aaPredicted RBP9.49□□□□□ -0.89
VPS53-202ENST00000389040 PCBP3P57721 371 aaKnown RBP9.49□□□□□ -0.89
VPS53-202ENST00000389040 GABARAPL2P60520 117 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 DSTNP60981 165 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 MAT1AQ00266 395 aaKnown RBP9.49□□□□□ -0.89
VPS53-202ENST00000389040 RHAGQ02094 409 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 TNFRSF17Q02223 184 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 CD47Q08722 323 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 CDC20Q12834 499 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 MEP1AQ16819 746 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 CTU2Q2VPK5 515 aaKnown RBP9.49□□□□□ -0.89
VPS53-202ENST00000389040 IFI44LQ53G44 452 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 CRB2Q5IJ48 1285 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 C6orf141Q5SZD1 244 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 SAXO2Q658L1 398 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 FAHD1Q6P587 224 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 ATG16L2Q8NAA4 619 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 EXOSC8Q96B26 276 aaKnown RBP9.49□□□□□ -0.89
VPS53-202ENST00000389040 ZBED6CLQ96FA7 236 aaPredicted RBP9.49□□□□□ -0.89
VPS53-202ENST00000389040 ZNF347Q96SE7 839 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 PELOQ9BRX2 385 aaKnown RBP9.49□□□□□ -0.89
VPS53-202ENST00000389040 RUBCNLQ9H714 662 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 KRT84Q9NSB2 600 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 EHD3Q9NZN3 535 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 NDUFAF4Q9P032 175 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 BLOC1S6Q9UL45 172 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 PCDHGB3Q9Y5G1 929 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 DMXL2Q8TDJ6 3036 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 FRYQ5TBA9 3013 aa9.49□□□□□ -0.89
VPS53-202ENST00000389040 IGKV3D-11A0A0A0MRZ8 115 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 A0A0G2JN53 185 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ZNF860A6NHJ4 632 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 M0QX08 132 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 CDK2AP1O14519 115 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ADAMDEC1O15204 470 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 NR2F6P10588 404 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 CYP4B1P13584 511 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 RRM2P31350 389 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 TTKP33981 857 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 GALNSP34059 522 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 RPS6KA3P51812 740 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 SOX8P57073 446 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 SNRPNP63162 240 aaKnown RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 IL1RL1Q01638 556 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 HSPB3Q12988 150 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 PMS2P3Q13401 168 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 TOP3AQ13472 1001 aaPredicted RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 KEAP1Q14145 624 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 RAB39AQ14964 217 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 NSDHLQ15738 373 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 NEDD8Q15843 81 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ST3GAL2Q16842 350 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 SYT16Q17RD7 645 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 SPDYE7PQ495Y7 208 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 MINDY4Q4G0A6 757 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 TSEN54Q7Z6J9 526 aaKnown RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 CLVS1Q8IUQ0 354 aaPredicted RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 SETD9Q8NE22 299 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 FBLIM1Q8WUP2 373 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 MAPKAP1Q9BPZ7 522 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 PRTFDC1Q9NRG1 225 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ACSS1Q9NUB1 689 aaPredicted RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 TAS2R7Q9NYW3 318 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ATG4BQ9Y4P1 393 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 TCRBV16S1A1N1A0A5B0 115 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ZNF701M0R085 212 aaPredicted RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 ITGA2P17301 1181 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 TNFRSF1BP20333 461 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ITPKBP27987 946 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 CLK3P49761 638 aaKnown RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 RPS26P62854 115 aaKnown RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 OLR1P78380 273 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 IL5RAQ01344 420 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 RAPSNQ13702 412 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ERV3-1Q14264 604 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 MLC1Q15049 377 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 NDUFAF5Q5TEU4 345 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 LAIR2Q6ISS4 152 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 REEP3Q6NUK4 255 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 NDUFAF7Q7L592 441 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 MRGPREQ86SM8 312 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 LAPTM4BQ86VI4 370 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms