RNA–Protein interactions for RNA: ENST00000375425.9

NELFE-201, Transcript of negative elongation factor complex member E, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NELFE, Length 1,405 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-201ENST00000375425 PPP4R1LQ9P1A2 415 aa12.9□□□□□ -0.34
NELFE-201ENST00000375425 CBLCQ9ULV8 474 aa12.9□□□□□ -0.34
NELFE-201ENST00000375425 PTGDR2Q9Y5Y4 395 aa12.9□□□□□ -0.34
NELFE-201ENST00000375425 SLC28A1O00337 649 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 SCO2O43819 266 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 FADS1O60427 444 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 PSMG1O95456 288 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 EPXP11678 715 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 DSCR4P56555 118 aaPredicted RBP12.89□□□□□ -0.35
NELFE-201ENST00000375425 CLDN18P56856 261 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 DAZAP2Q15038 168 aaPredicted RBP12.89□□□□□ -0.35
NELFE-201ENST00000375425 DECR1Q16698 335 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 Q6ZSR9 355 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 IKBIPQ70UQ0 350 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 C10orf107Q8IVU9 208 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 GOT1L1Q8NHS2 421 aaPredicted RBP12.89□□□□□ -0.35
NELFE-201ENST00000375425 GFM2Q969S9 779 aaKnown RBP12.89□□□□□ -0.35
NELFE-201ENST00000375425 TRIM44Q96DX7 344 aaPredicted RBP12.89□□□□□ -0.35
NELFE-201ENST00000375425 METTL2AQ96IZ6 378 aaKnown RBP12.89□□□□□ -0.35
NELFE-201ENST00000375425 ZFP3Q96NJ6 502 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 SFXN3Q9BWM7 321 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 DSN1Q9H410 356 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 Q9N2J8 555 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 C1orf109Q9NX04 203 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 FLRT3Q9NZU0 649 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 MED11Q9P086 117 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 AKAP6Q13023 2319 aa12.89□□□□□ -0.35
NELFE-201ENST00000375425 RGS14O43566 566 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 ZNF708P17019 499 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 PRPH2P23942 346 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 B3GALT5-AS1P59052 145 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 SLC18A2Q05940 514 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 ZNHIT3Q15649 155 aaPredicted RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 BCL2A1Q16548 175 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 ZNF551Q7Z340 670 aaPredicted RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 LUZP2Q86TE4 346 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 CDC20BQ86Y33 519 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 GCNT2Q8N0V5 402 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 FADS6Q8N9I5 356 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 DUSP19Q8WTR2 217 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 NINJ1Q92982 152 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 GATA5Q9BWX5 397 aaPredicted RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 RBM24Q9BX46 236 aaKnown RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 RTN4RQ9BZR6 473 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 LRTM1Q9HBL6 345 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 SDHAF3Q9NRP4 125 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 CLCF1Q9UBD9 225 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 ST6GALNAC2Q9UJ37 374 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 FIS1Q9Y3D6 152 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 HRNRQ86YZ3 2850 aaPredicted RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 MPDZO75970 2070 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 TLDC2A0PJX2 215 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 NPIPB8E9PQR5 432 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 AZIN1O14977 448 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 TRIM13O60858 407 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 IL33O95760 270 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 TGM6O95932 706 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 GABRA3P34903 492 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 RFX3P48380 749 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 SORDQ00796 357 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 HSPB3Q12988 150 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 STX5Q13190 355 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 RFTN2Q52LD8 501 aaPredicted RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 ANKRD26P1Q6NSI1 321 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 GRAMD2AQ8IUY3 354 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 OR2M3Q8NG83 312 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 OR2T11Q8NH01 316 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 CIDECQ96AQ7 238 aaPredicted RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 RMND5BQ96G75 393 aaPredicted RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 FOXC2Q99958 501 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 LMF2Q9BU23 707 aaKnown RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 ACBD3Q9H3P7 528 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 TUBB1Q9H4B7 451 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 BAIAP2L1Q9UHR4 511 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 MRTO4Q9UKD2 239 aaKnown RBP12.88□□□□□ -0.35
NELFE-201ENST00000375425 ABCG2Q9UNQ0 655 aa12.88□□□□□ -0.35
NELFE-201ENST00000375425 ITPR3Q14573 2671 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 MED13LQ71F56 2210 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 PDPK1O15530 556 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 AKAP10O43572 662 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 LINC00032P0C843 101 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 PRPS2P11908 318 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 PEPDP12955 493 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 HK1P19367 917 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 CPA2P48052 419 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 CLK3P49761 638 aaKnown RBP12.87□□□□□ -0.35
NELFE-201ENST00000375425 PSMD4P55036 377 aaKnown RBP12.87□□□□□ -0.35
NELFE-201ENST00000375425 CLDN15P56746 228 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 RIPPLY3P57055 190 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 PCLAFQ15004 111 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 FBXW10Q5XX13 1052 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 CHMP1BQ7LBR1 199 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 MARCH3Q86UD3 253 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 UBQLNLQ8IYU4 475 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 OR5M1Q8NGP8 315 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.87□□□□□ -0.352e-7■■■■■ 32.7
NELFE-201ENST00000375425 TSSK3Q96PN8 268 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 TRMOQ9BU70 441 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 PTGES2Q9H7Z7 377 aa12.87□□□□□ -0.35
NELFE-201ENST00000375425 EQTNQ9NQ60 294 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms