RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 AVPR1BP47901 424 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CEBPAP49715 358 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PKIAP61925 76 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SELENOWP63302 87 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ARFRP1Q13795 201 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 IQCJQ1A5X6 159 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ACOT6Q3I5F7 207 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 IGSF11Q5DX21 431 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 APOBEC3HQ6NTF7 200 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 NXPE1Q8N323 547 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ANKK1Q8NFD2 765 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 APH1BQ8WW43 257 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 DDX4Q9NQI0 724 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 MAN2C1Q9NTJ4 1040 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 NOSIPQ9Y314 301 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 LRRC37A3O60309 1634 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 C1orf167Q5SNV9 1468 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 LNP1A1A4G5 178 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SEC14L6B5MCN3 397 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GTPBP1O00178 669 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SMAD6O43541 496 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF254O75437 659 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 S1PR4O95977 384 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 AMY2AP04746 511 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ALDH2P05091 517 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 DCNP07585 359 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SLC35G6P0C7Q6 338 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 FUT4P22083 530 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 RFC3P40938 356 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 INHBEP58166 350 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SF1Q15637 639 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 NOXRED1Q6NXP6 359 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 FAM196AQ6ZSG2 479 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SGPP2Q8IWX5 399 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ARNTL2Q8WYA1 636 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SMAD5Q99717 465 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 VPS25Q9BRG1 176 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TM6SF2Q9BZW4 377 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 B3GNT4Q9C0J1 378 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GPR88Q9GZN0 384 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PSAT1Q9Y617 370 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PPP5D1E7EU14 171 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PRKACGP22612 351 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 LCN6P62502 163 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CBX2Q14781 532 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 P2RY14Q15391 338 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CYP27C1Q4G0S4 372 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ALG10BQ5I7T1 473 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 FRMPD2BQ6IN97 320 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 LAX1Q8IWV1 398 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 COX18Q8N8Q8 333 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR4K5Q8NGD3 323 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR51G2Q8NGK0 314 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR5D16Q8NGK9 328 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 HGDQ93099 445 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 YIPF5Q969M3 257 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SAT2Q96F10 170 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF395Q9H8N7 513 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NMNAT1Q9HAN9 279 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 EXO1Q9UQ84 846 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 HIF3AQ9Y2N7 669 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PLEKHM1Q9Y4G2 1056 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RAI2Q9Y5P3 530 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TRAV20A0A0B4J274 112 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR6C6A6NF89 314 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR51F1A6NGY5 319 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 K7ERU9 68 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 FMO6PO60774 539 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RAD51DO75771 328 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZBTB7AO95365 584 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ATP1B1P05026 303 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 C1GALT1C1LP0DN25 315 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 INSRRP14616 1297 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CR2P20023 1033 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CXCR1P25024 350 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TIA1P31483 386 aaKnown RBP eCLIP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TAS2R30P59541 319 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PTPRRQ15256 657 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ENPP6Q6UWR7 440 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 MOB1BQ7L9L4 216 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ANKRD46Q86W74 232 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 HORMAD2Q8N7B1 307 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NFKBIDQ8NI38 313 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SLC35F5Q8WV83 523 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 BRI3BPQ8WY22 251 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PMM1Q92871 262 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZBTB8AQ96BR9 441 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TECTBQ96PL2 329 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NAA50Q9GZZ1 169 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SHARPINQ9H0F6 387 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SPG21Q9NZD8 308 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PCDHGA2Q9Y5H1 932 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 HAS3O00219 553 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NUPL2O15504 423 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 VNN1O95497 513 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 MAKP20794 623 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PCGF3Q3KNV8 242 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GLB1L2Q8IW92 636 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 UMODL1-AS1Q8N2C9 162 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SLC22A18Q96BI1 424 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms