RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 TIPARPQ7Z3E1 657 aaKnown RBP20.67■□□□□ 0.9
ATG4D-209ENST00000588857 CPEB2Q7Z5Q1 589 aaKnown RBP20.67■□□□□ 0.9
ATG4D-209ENST00000588857 VTCN1Q7Z7D3 282 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 GALNT15Q8N3T1 639 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 ESX1Q8N693 406 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 ZNF321PQ8N8H1 164 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 OR1N1Q8NGS0 311 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 OR2Y1Q8NGV0 311 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 RASSF5Q8WWW0 418 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 LRTOMTQ8WZ04 291 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 PKP2Q99959 881 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 NUDT9Q9BW91 350 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 Q9N2J8 555 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 SEC14L3Q9UDX4 400 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 DTX4Q9Y2E6 619 aa20.67■□□□□ 0.9
ATG4D-209ENST00000588857 IGHV3-20A0A0C4DH32 117 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 MT-ND1P03886 318 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 TCN2P20062 427 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 FOLR3P41439 243 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 PSG6Q00889 435 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 OLIG3Q7RTU3 272 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 LILRA2Q8N149 483 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 CHDHQ8NE62 594 aaPredicted RBP20.66■□□□□ 0.9
ATG4D-209ENST00000588857 GATA6Q92908 595 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 SDF2Q99470 211 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 LPAR4Q99677 370 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 ITPAQ9BY32 194 aa20.66■□□□□ 0.9
ATG4D-209ENST00000588857 GPC6Q9Y625 555 aaPredicted RBP20.66■□□□□ 0.9
ATG4D-209ENST00000588857 CHD8Q9HCK8 2581 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 SAGE2PA6NJ88 616 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 STX11O75558 287 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 KLF7O75840 302 aaPredicted RBP20.65■□□□□ 0.9
ATG4D-209ENST00000588857 MFN2O95140 757 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 CHRNEQ04844 493 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 CCNJQ5T5M9 372 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 SMYD1Q8NB12 490 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 CT55Q8WUE5 264 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 RMND5BQ96G75 393 aaPredicted RBP20.65■□□□□ 0.9
ATG4D-209ENST00000588857 SLC38A1Q9H2H9 487 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 TRIM45Q9H8W5 580 aaPredicted RBP20.65■□□□□ 0.9
ATG4D-209ENST00000588857 POLR1BQ9H9Y6 1135 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 CACYBPQ9HB71 228 aaKnown RBP20.65■□□□□ 0.9
ATG4D-209ENST00000588857 RIMS3Q9UJD0 308 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 BAG5Q9UL15 447 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 WDR45Q9Y484 360 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 OR10H1Q9Y4A9 318 aa20.65■□□□□ 0.9
ATG4D-209ENST00000588857 GXYLT2A0PJZ3 443 aa20.64■□□□□ 0.9
ATG4D-209ENST00000588857 FCMRO60667 390 aa20.64■□□□□ 0.9
ATG4D-209ENST00000588857 RAB40ALP0C0E4 278 aa20.64■□□□□ 0.9
ATG4D-209ENST00000588857 PTDSS1P48651 473 aaKnown RBP20.64■□□□□ 0.9
ATG4D-209ENST00000588857 GABREP78334 506 aa20.64■□□□□ 0.9
ATG4D-209ENST00000588857 FAM69BQ5VUD6 431 aa20.64■□□□□ 0.9
ATG4D-209ENST00000588857 PAPD4Q6PIY7 484 aaKnown RBP20.64■□□□□ 0.9
ATG4D-209ENST00000588857 B3GNT7Q8NFL0 401 aa20.64■□□□□ 0.9
ATG4D-209ENST00000588857 SPPL2AQ8TCT8 520 aa20.64■□□□□ 0.9
ATG4D-209ENST00000588857 BTBD9Q96Q07 612 aa20.64■□□□□ 0.9
ATG4D-209ENST00000588857 MTHFD2LQ9H903 347 aaPredicted RBP20.64■□□□□ 0.9
ATG4D-209ENST00000588857 GPR55Q9Y2T6 319 aaPredicted RBP20.64■□□□□ 0.9
ATG4D-209ENST00000588857 DSPPQ9NZW4 1301 aa20.64■□□□□ 0.89
ATG4D-209ENST00000588857 OR6C76A6NM76 312 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 C1QTNF9BB2RNN3 333 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 PCDH17O14917 1159 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 ALPPP05187 535 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 UMODP07911 640 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 C1QTNF9P0C862 333 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 TRHRP34981 398 aaPredicted RBP20.63■□□□□ 0.89
ATG4D-209ENST00000588857 PPICP45877 212 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 TRIP10Q15642 601 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 IFI44LQ53G44 452 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 HLA-DQA1Q5Y7H0 255 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 FIGNL1Q6PIW4 674 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 UNQ6494/PRO21346Q6UXR6 183 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 SLC29A4Q7RTT9 530 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 MARCH9Q86YJ5 346 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 ZDHHC21Q8IVQ6 265 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 NLGN4XQ8N0W4 816 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 NLGN4YQ8NFZ3 816 aaPredicted RBP20.63■□□□□ 0.89
ATG4D-209ENST00000588857 C8orf44Q96CB5 159 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 MESP1Q9BRJ9 268 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 ZNF350Q9GZX5 532 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 IL1RAPQ9NPH3 570 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 POLE3Q9NRF9 147 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 AGPAT4Q9NRZ5 378 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 MKLN1Q9UL63 735 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 C2orf92A0A1B0GVN3 265 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 TMEM229AB2RXF0 380 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 SEC24DO94855 1032 aaPredicted RBP20.63■□□□□ 0.89
ATG4D-209ENST00000588857 KCNK2O95069 426 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 LDLRP01130 860 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 IGHEP01854 428 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 FABP3P05413 133 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 CT45A8P0DMV1 189 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 CT45A9P0DMV2 189 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 RBMS1P29558 406 aaKnown RBP20.63■□□□□ 0.89
ATG4D-209ENST00000588857 DCAF7P61962 342 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 RPS15P62841 145 aaKnown RBP20.63■□□□□ 0.89
ATG4D-209ENST00000588857 KCNJ10P78508 379 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 NNATQ16517 81 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 CT45A2Q5DJT8 189 aa20.63■□□□□ 0.89
ATG4D-209ENST00000588857 TYW3Q6IPR3 259 aaKnown RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms