RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PLAG1Q6DJT9 500 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 HSDL2Q6YN16 418 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 FKBP9P1Q75LS8 142 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 RAB43Q86YS6 212 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 ARMC8Q8IUR7 673 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 APCDD1LQ8NCL9 501 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 CDS1Q92903 461 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 ADIPOR1Q96A54 375 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 PYURFQ96I23 114 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 IMMP1LQ96LU5 166 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 SDF2Q99470 211 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 YIPF4Q9BSR8 244 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 HOXD1Q9GZZ0 328 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 CACYBPQ9HB71 228 aaKnown RBP14.17□□□□□ -0.14
SS18-215ENST00000580642 S100A14Q9HCY8 104 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 MMP25Q9NPA2 562 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 BAG5Q9UL15 447 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 IFT52Q9Y366 437 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 GPC6Q9Y625 555 aaPredicted RBP14.17□□□□□ -0.14
SS18-215ENST00000580642 KIF26BQ2KJY2 2108 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 CEP250Q9BV73 2442 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 PRAMEF27A3QJZ7 478 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 A8MUA0 341 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 A8MUI8 341 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 M0QX08 132 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 HNRNPRO43390 633 aaKnown RBP14.16□□□□□ -0.14
SS18-215ENST00000580642 SUV39H1O43463 412 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 GCM2O75603 506 aaPredicted RBP14.16□□□□□ -0.14
SS18-215ENST00000580642 ZFAND5O76080 213 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 RAP2AP10114 183 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 COX6A1P12074 109 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 NAGAP17050 411 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 MRPS22P82650 360 aaKnown RBP14.16□□□□□ -0.14
SS18-215ENST00000580642 PCOLCEQ15113 449 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 SYPL1Q16563 259 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.16□□□□□ -0.14
SS18-215ENST00000580642 GPAT3Q53EU6 434 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 CYBRD1Q53TN4 286 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 FAAH2Q6GMR7 532 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 KIRREL2Q6UWL6 708 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 KBTBD2Q8IY47 623 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 ADGRG5Q8IZF4 528 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 IL22RA1Q8N6P7 574 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 ZNF441Q8N8Z8 693 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 ANKFN1Q8N957 763 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 SIMC1Q8NDZ2 872 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 OR11G2Q8NGC1 345 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 SPPL2AQ8TCT8 520 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 DOHHQ9BU89 302 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 ITPAQ9BY32 194 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 WWTR1Q9GZV5 400 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 SLC38A1Q9H2H9 487 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 STX18Q9P2W9 335 aaKnown RBP14.16□□□□□ -0.14
SS18-215ENST00000580642 CBLCQ9ULV8 474 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 WDR45Q9Y484 360 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 AP4S1Q9Y587 144 aa14.16□□□□□ -0.14
SS18-215ENST00000580642 CNOT1A5YKK6 2376 aaKnown RBP14.15□□□□□ -0.14
SS18-215ENST00000580642 NSG1A0A0A6YYJ2 146 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 CDK2AP1O14519 115 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 SOCS6O14544 535 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 KCNK2O95069 426 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 MFN2O95140 757 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 H6PDO95479 791 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 HPP00738 406 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 THBS1P07996 1170 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 CHRM4P08173 479 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 ATXN8OSP0DMR3 200 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 ATP6V1C1P21283 382 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 RNF4P78317 190 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 CHRNB3Q05901 458 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 FUT5Q11128 374 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 DECR1Q16698 335 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 LRRC23Q53EV4 343 aaPredicted RBP14.15□□□□□ -0.14
SS18-215ENST00000580642 PPP1R32Q7Z5V6 425 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 SLC44A2Q8IWA5 706 aaPredicted RBP14.15□□□□□ -0.14
SS18-215ENST00000580642 PEX5LQ8IYB4 626 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 ZNF619Q8N2I2 560 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 SLC15A4Q8N697 577 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 ELP5Q8TE02 316 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 CANT1Q8WVQ1 401 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 RNPEPL1Q9HAU8 725 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 C6orf203Q9P0P8 240 aaPredicted RBP14.15□□□□□ -0.14
SS18-215ENST00000580642 PRDM4Q9UKN5 801 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 ZNF232Q9UNY5 417 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 OR10H1Q9Y4A9 318 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 PCDHGA10Q9Y5H3 936 aa14.15□□□□□ -0.14
SS18-215ENST00000580642 DCDC2BA2VCK2 349 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 SYT5O00445 386 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 PEX12O00623 359 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 KIAA0513O60268 411 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 ABCB7O75027 752 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 PRKD3O94806 890 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 SEC24DO94855 1032 aaPredicted RBP14.14□□□□□ -0.15
SS18-215ENST00000580642 ATP6V1G2O95670 118 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 DBIP07108 87 aaKnown RBP14.14□□□□□ -0.15
SS18-215ENST00000580642 ENDOUP21128 410 aaKnown RBP14.14□□□□□ -0.15
SS18-215ENST00000580642 PRKAR1BP31321 381 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 NRG3P56975 720 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 CRTC2Q53ET0 693 aaPredicted RBP14.14□□□□□ -0.15
SS18-215ENST00000580642 TYW3Q6IPR3 259 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms