RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 FAM114A2Q9NRY5 505 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 CENPMQ9NSP4 180 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 KIAA1107Q9UPP5 1409 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 TTC26A0AVF1 554 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 NPIPA2E9PIF3 369 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 F8WDY8 70 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 H3BTX0 84 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PDLIM1O00151 329 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 CHD1O14646 1710 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 UNC13BO14795 1591 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 ABCC5O15440 1437 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 LRRTM2O43300 516 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 SDC3O75056 442 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 VPS26AO75436 327 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 APBB3O95704 486 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 RENP00797 406 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 IGHG3P01860 377 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PGFP49763 221 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PPIAP62937 165 aaKnown RBP3.72□□□□□ -1.81
LINC00560-201ENST00000564593 MRPS6P82932 125 aaKnown RBP3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PRKCEQ02156 737 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 HSF2Q03933 536 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PDZK1IP1Q13113 114 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 SHROOM2Q13796 1616 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 CRMP1Q14194 572 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PTPRKQ15262 1439 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 NCOA1Q15788 1441 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 C17orf58Q2M2W7 97 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 ADPRMQ3LIE5 342 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 NHLRC3Q5JS37 347 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 SEL1L2Q5TEA6 688 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PRR5LQ6MZQ0 368 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 CCDC141Q6ZP82 1450 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 GTSCR1Q86UQ5 136 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 POM121L12Q8N7R1 296 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 GIPC3Q8TF64 312 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 ITLN1Q8WWA0 313 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 SLC25A36Q96CQ1 311 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PUS3Q9BZE2 481 aaKnown RBP3.72□□□□□ -1.81
LINC00560-201ENST00000564593 DPH5Q9H2P9 285 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 ATXN10Q9UBB4 475 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 MBD2Q9UBB5 411 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 GHRLQ9UBU3 117 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 ZNF608Q9ULD9 1512 aaPredicted RBP3.72□□□□□ -1.81
LINC00560-201ENST00000564593 RNF24Q9Y225 148 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 DHRS7Q9Y394 339 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 KDM5BQ9UGL1 1544 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 GPATCH8Q9UKJ3 1502 aaKnown RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 RALGAPBQ86X10 1494 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 C9orf84Q5VXU9 1444 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 ANKRD50Q9ULJ7 1429 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 TRABD2BA6NFA1 517 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 MFSD2BA6NFX1 497 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 H0YL77 283 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 IMPA2O14732 288 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 TYROBPO43914 113 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 SH3BGRLO75368 114 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 CRLF1O75462 422 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 TOXO94900 526 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 TBX6O95947 436 aaPredicted RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 CA3P07451 260 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 SNRPCP09234 159 aaKnown RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 ANXA4P09525 319 aaPredicted RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 DESP17661 470 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 PAICSP22234 425 aaKnown RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 ARHGDIAP52565 204 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF85Q03923 595 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 COX10Q12887 443 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 EIF2B1Q14232 305 aaKnown RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 LPAL2Q16609 132 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 DMKNQ6E0U4 476 aaPredicted RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 ARSKQ6UWY0 536 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 ZBTB44Q8NCP5 570 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 OR2L2Q8NH16 312 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 PINX1Q96BK5 328 aaKnown RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 TRIM9Q9C026 710 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 RPAP3Q9H6T3 665 aaPredicted RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 KAT8Q9H7Z6 458 aaKnown RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 LIN28AQ9H9Z2 209 aaKnown RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 AMBNQ9NP70 447 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 TRPV5Q9NQA5 729 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 DCAF13Q9NV06 445 aaKnown RBP3.71□□□□□ -1.82
LINC00560-201ENST00000564593 KLRF1Q9NZS2 232 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 FOXJ3Q9UPW0 622 aa3.71□□□□□ -1.82
LINC00560-201ENST00000564593 KDM5CP41229 1560 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ARAP3Q8WWN8 1544 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 MBD5Q9P267 1494 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ANKRD30BQ9BXX2 1392 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF487B1APH4 448 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 C11orf98E9PRG8 122 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 K7EPI3 171 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 E2F3O00716 465 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ALOX15BO15296 676 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 DIRAS3O95661 229 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 IFNB1P01574 187 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 HOXB7P09629 217 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 GSTT2P0CG29 244 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 GSTT2BP0CG30 244 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ACADSP16219 412 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 HTR5AP47898 357 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms