RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 HSPB3Q12988 150 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 STX5Q13190 355 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 TRIM42Q8IWZ5 723 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 OR4K17Q8NGC6 315 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 FAM76AQ8TAV0 307 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 LRRC46Q96FV0 321 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 EGLN2Q96KS0 407 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 SFXN2Q96NB2 322 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 GATA5Q9BWX5 397 aaPredicted RBP16.08■□□□□ 0.16
NME3-205ENST00000563854 L2HGDHQ9H9P8 463 aa16.08■□□□□ 0.16
NME3-205ENST00000563854 RPH3AQ9Y2J0 694 aaPredicted RBP16.08■□□□□ 0.16
NME3-205ENST00000563854 KIAA1549Q9HCM3 1950 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 SLC28A1O00337 649 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 AZIN1O14977 448 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 AKAP10O43572 662 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 TACR1P25103 407 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 GPC1P35052 558 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 TIMP3P35625 211 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 KIR2DL3P43628 341 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 STARP49675 285 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 DGKQP52824 942 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 PNLIPRP2P54317 469 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 RPL38P63173 70 aaKnown RBP16.07■□□□□ 0.16
NME3-205ENST00000563854 MRPS22P82650 360 aaKnown RBP16.07■□□□□ 0.16
NME3-205ENST00000563854 SLC18A2Q05940 514 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 IFFO1Q0D2I5 559 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 ENPP6Q6UWR7 440 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 PLXDC2Q6UX71 529 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 IKBIPQ70UQ0 350 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 SZRD1Q7Z422 152 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 C9orf106Q8NAJ2 232 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 CLHC1Q8NHS4 586 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.07■□□□□ 0.16
NME3-205ENST00000563854 NRGNQ92686 78 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 APOPT1Q96IL0 206 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 AMDHD1Q96NU7 426 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 TUBA1CQ9BQE3 449 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 ANKZF1Q9H8Y5 726 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 EQTNQ9NQ60 294 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 C1orf109Q9NX04 203 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 PPP4R1LQ9P1A2 415 aa16.07■□□□□ 0.16
NME3-205ENST00000563854 A0A087WV62 115 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 CD8B2A6NJW9 211 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 UPK1AO00322 258 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 PDPK1O15530 556 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 CHEK2O96017 543 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 LINC00032P0C843 101 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 POU3F2P20265 443 aaPredicted RBP16.06■□□□□ 0.16
NME3-205ENST00000563854 SRD5A2P31213 254 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 EVI2BP34910 448 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 PSPHP78330 225 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 PSG6Q00889 435 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 ZNHIT3Q15649 155 aaPredicted RBP16.06■□□□□ 0.16
NME3-205ENST00000563854 GALNTL6Q49A17 601 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 ZNF551Q7Z340 670 aaPredicted RBP16.06■□□□□ 0.16
NME3-205ENST00000563854 DDIASQ8IXT1 998 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 OR2T11Q8NH01 316 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 AGR3Q8TD06 166 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 DTNBP1Q96EV8 351 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 TSSK3Q96PN8 268 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 FAM111AQ96PZ2 611 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 SH3GL2Q99962 352 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 MECRQ9BV79 373 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 Q9N2J8 555 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 FLRT3Q9NZU0 649 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 CRIM1Q9NZV1 1036 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 ZNF629Q9UEG4 869 aaPredicted RBP16.06■□□□□ 0.16
NME3-205ENST00000563854 CBLCQ9ULV8 474 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 C19orf53Q9UNZ5 99 aaPredicted RBP16.06■□□□□ 0.16
NME3-205ENST00000563854 CCL27Q9Y4X3 112 aa16.06■□□□□ 0.16
NME3-205ENST00000563854 MBD3L4A6NDZ8 208 aaPredicted RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 MBD3L3A6NE82 208 aaPredicted RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 MBD3L5A6NJ08 208 aaPredicted RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 TMEM233B4DJY2 109 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 TRIM13O60858 407 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 SPAG7O75391 227 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 SLITRK5O94991 958 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 CHRNGP07510 517 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 TMIGD3P0DMS9 266 aaPredicted RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 NEFHP12036 1026 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 CTSSP25774 331 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 DPP4P27487 766 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 ALDH3A1P30838 453 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 VSNL1P62760 191 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 DECR1Q16698 335 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 AAGABQ6PD74 315 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 OR2L13Q8N349 312 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 MBD3L2Q8NHZ7 208 aaPredicted RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 ZPLD1Q8TCW7 415 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.05■□□□□ 0.163e-6■■■■□ 24.4
NME3-205ENST00000563854 RNASE6Q93091 150 aaKnown RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 CIDECQ96AQ7 238 aaPredicted RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 PPCDCQ96CD2 204 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 ELP4Q96EB1 424 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 GPATCH1Q9BRR8 931 aaKnown RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 TUBB1Q9H4B7 451 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 CALHM2Q9HA72 323 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 DNAJB12Q9NXW2 375 aaKnown RBP16.05■□□□□ 0.16
NME3-205ENST00000563854 TAS2R7Q9NYW3 318 aa16.05■□□□□ 0.16
NME3-205ENST00000563854 SLC17A7Q9P2U7 560 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms